Package org.rcsb.openmms.loader

Provides classes to load macromolecular structure data files stored in mmCIF format into the MMS Entry data structure.

See:
Description

Class Summary

AtomSiteAnisotropCatLoader	Category Loader to load data into the EntryMethodImpl.AtomSiteAnisotrop structure.
AtomSiteCatLoader	Category Loader to load data into the EntryMethodImpl.AtomSite structure.
AtomSitesAltCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.AtomSitesAlt structure.
AtomSitesAltEnsCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.AtomSitesAltEns structure.
AtomSitesAltGenCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.AtomSitesAltGen structure.
AtomSitesCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.AtomSites structure.
AtomSitesFootnoteCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.AtomSitesFootnote structure.
AtomTypeCatLoader	Category Loader to load data into the EntryMethodImpl.AtomType structure.
CellCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Cell structure.
CellMeasurementCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.CellMeasurement structure.
CellMeasurementReflnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.CellMeasurementRefln structure.
ChemCompAngleCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompAngle structure.
ChemCompAtomCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompAtom structure.
ChemCompBondCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompBond structure.
ChemCompCatLoader	Category Loader to load data into the EntryMethodImpl.ChemComp structure.
ChemCompChirAtomCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompChirAtom structure.
ChemCompChirCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompChir structure.
ChemCompLinkCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompLink structure.
ChemCompPlaneAtomCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompPlaneAtom structure.
ChemCompPlaneCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompPlane structure.
ChemCompTorCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompTor structure.
ChemCompTorValueCatLoader	Category Loader to load data into the EntryMethodImpl.ChemCompTorValue structure.
ChemLinkAngleCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkAngle structure.
ChemLinkBondCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkBond structure.
ChemLinkCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLink structure.
ChemLinkChirAtomCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkChirAtom structure.
ChemLinkChirCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkChir structure.
ChemLinkPlaneAtomCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkPlaneAtom structure.
ChemLinkPlaneCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkPlane structure.
ChemLinkTorCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkTor structure.
ChemLinkTorValueCatLoader	Category Loader to load data into the EntryMethodImpl.ChemLinkTorValue structure.
CitationAuthorCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.CitationAuthor structure.
CitationCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.Citation structure.
CitationEditorCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.CitationEditor structure.
ComputingCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.Computing structure.
DatabaseCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.Database structure.
DatabasePdbCaveatCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.DatabasePdbCaveat structure.
DatabasePdbMatrixCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.DatabasePdbMatrix structure.
DatabasePdbRemarkCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.DatabasePdbRemark structure.
DatabasePdbRevCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.DatabasePdbRev structure.
DatabasePdbRevRecordCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.DatabasePdbRevRecord structure.
DatabasePdbTvectCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.DatabasePdbTvect structure.
DiffrnAttenuatorCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnAttenuator structure.
DiffrnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Diffrn structure.
DiffrnDetectorCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnDetector structure.
DiffrnMeasurementCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnMeasurement structure.
DiffrnOrientMatrixCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnOrientMatrix structure.
DiffrnOrientReflnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnOrientRefln structure.
DiffrnRadiationCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnRadiation structure.
DiffrnRadiationWavelengthCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnRadiationWavelength structure.
DiffrnReflnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnRefln structure.
DiffrnReflnsCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnReflns structure.
DiffrnScaleGroupCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnScaleGroup structure.
DiffrnSourceCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnSource structure.
DiffrnStandardReflnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnStandardRefln structure.
DiffrnStandardsCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.DiffrnStandards structure.
EntityCatLoader	Category Loader to load data into the EntryMethodImpl.Entity structure.
EntityKeywordsCatLoader	Category Loader to load data into the EntryMethodImpl.EntityKeywords structure.
EntityLinkCatLoader	Category Loader to load data into the EntryMethodImpl.EntityLink structure.
EntityNameComCatLoader	Category Loader to load data into the EntryMethodImpl.EntityNameCom structure.
EntityNameSysCatLoader	Category Loader to load data into the EntryMethodImpl.EntityNameSys structure.
EntityPolyCatLoader	Category Loader to load data into the EntryMethodImpl.EntityPoly structure.
EntityPolySeqCatLoader	Category Loader to load data into the EntryMethodImpl.EntityPolySeq structure.
EntitySrcGenCatLoader	Category Loader to load data into the EntryMethodImpl.EntitySrcGen structure.
EntitySrcNatCatLoader	Category Loader to load data into the EntryMethodImpl.EntitySrcNat structure.
EntryLinkCatLoader	Category Loader to load data into the EntryMethodImpl.EntryLink structure.
EntryMethodImpl	The Entry/Subentry classes contain the arrays of data structures that store all of the information known about a particular entry (i.e. an MMS structure) as well as the methods for accessing those data structures.
ExptlCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Exptl structure.
ExptlCrystalCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.ExptlCrystal structure.
ExptlCrystalFaceCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.ExptlCrystalFace structure.
ExptlCrystalGrowCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.ExptlCrystalGrow structure.
ExptlCrystalGrowCompCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.ExptlCrystalGrowComp structure.
GeomAngleCatLoader	Category Loader to load data into the EntryMethodImpl.GeomAngle structure.
GeomBondCatLoader	Category Loader to load data into the EntryMethodImpl.GeomBond structure.
GeomCatLoader	Category Loader to load data into the EntryMethodImpl.Geom structure.
GeomContactCatLoader	Category Loader to load data into the EntryMethodImpl.GeomContact structure.
GeomHbondCatLoader	Category Loader to load data into the EntryMethodImpl.GeomHbond structure.
GeomTorsionCatLoader	Category Loader to load data into the EntryMethodImpl.GeomTorsion structure.
LinkTable	This class specifies a table containing links that bind the Cif Category/Item to the Cat Loader class which handles data for that Category/Item Generated by the program MMSExpr.
MmsReferenceEntryMethodImpl	The Entry/Subentry classes contain the arrays of data structures that store all of the information known about a particular entry (i.e. an MMS structure) as well as the methods for accessing those data structures.
NmrEntryMethodImpl	The Entry/Subentry classes contain the arrays of data structures that store all of the information known about a particular entry (i.e. an MMS structure) as well as the methods for accessing those data structures.
PdbxDatabaseMessageCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.PdbxDatabaseMessage structure.
PdbxDatabasePdbObsSprCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.PdbxDatabasePdbObsSpr structure.
PdbxDatabaseProcCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.PdbxDatabaseProc structure.
PdbxDatabaseRelatedCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.PdbxDatabaseRelated structure.
PdbxDatabaseRemarkCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.PdbxDatabaseRemark structure.
PdbxDatabaseStatusCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.PdbxDatabaseStatus structure.
PdbxEntityAssemblyCatLoader	Category Loader to load data into the EntryMethodImpl.PdbxEntityAssembly structure.
PdbxEntityNameCatLoader	Category Loader to load data into the EntryMethodImpl.PdbxEntityName structure.
PdbxEntitySrcSynCatLoader	Category Loader to load data into the EntryMethodImpl.PdbxEntitySrcSyn structure.
PdbxNmrConstraintsCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrConstraints structure.
PdbxNmrDetailsCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrDetails structure.
PdbxNmrEnsembleCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrEnsemble structure.
PdbxNmrEnsembleRmsCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrEnsembleRms structure.
PdbxNmrExptlCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrExptl structure.
PdbxNmrExptlSampleCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrExptlSample structure.
PdbxNmrExptlSampleConditionsCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrExptlSampleConditions structure.
PdbxNmrForceConstantsCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrForceConstants structure.
PdbxNmrRefineCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrRefine structure.
PdbxNmrRepresentativeCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrRepresentative structure.
PdbxNmrSampleDetailsCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrSampleDetails structure.
PdbxNmrSoftwareCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrSoftware structure.
PdbxNmrSpectrometerCatLoader	Category Loader to load data into the NmrEntryMethodImpl.PdbxNmrSpectrometer structure.
PdbxNonpolySchemeCatLoader	Category Loader to load data into the EntryMethodImpl.PdbxNonpolyScheme structure.
PdbxPolySeqSchemeCatLoader	Category Loader to load data into the EntryMethodImpl.PdbxPolySeqScheme structure.
PdbxPrereleaseSeqCatLoader	Category Loader to load data into the EntryMethodImpl.PdbxPrereleaseSeq structure.
PdbxRefineAuxFileCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PdbxRefineAuxFile structure.
PdbxRefineCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PdbxRefine structure.
PdbxRefineTlsCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PdbxRefineTls structure.
PdbxRefineTlsGroupCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PdbxRefineTlsGroup structure.
PdbxStructSheetHbondCatLoader	Category Loader to load data into the EntryMethodImpl.PdbxStructSheetHbond structure.
PdbxXplorFileCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PdbxXplorFile structure.
PhasingAveragingCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingAveraging structure.
PhasingCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Phasing structure.
PhasingIsomorphousCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingIsomorphous structure.
PhasingMadCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMad structure.
PhasingMadClustCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMadClust structure.
PhasingMadExptCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMadExpt structure.
PhasingMadRatioCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMadRatio structure.
PhasingMadSetCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMadSet structure.
PhasingMirCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMir structure.
PhasingMirDerCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMirDer structure.
PhasingMirDerReflnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMirDerRefln structure.
PhasingMirDerShellCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMirDerShell structure.
PhasingMirDerSiteCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMirDerSite structure.
PhasingMirShellCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingMirShell structure.
PhasingSetCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingSet structure.
PhasingSetReflnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.PhasingSetRefln structure.
RefineAnalyzeCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.RefineAnalyze structure.
RefineBIsoCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.RefineBIso structure.
RefineCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Refine structure.
RefineHistCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.RefineHist structure.
RefineLsRestrCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.RefineLsRestr structure.
RefineLsRestrNcsCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.RefineLsRestrNcs structure.
RefineLsShellCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.RefineLsShell structure.
RefineOccupancyCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.RefineOccupancy structure.
ReflnCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Refln structure.
ReflnsCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Reflns structure.
ReflnsScaleCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.ReflnsScale structure.
ReflnsShellCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.ReflnsShell structure.
SoftwareCatLoader	Category Loader to load data into the MmsReferenceEntryMethodImpl.Software structure.
StructAsymCatLoader	Category Loader to load data into the EntryMethodImpl.StructAsym structure.
StructBiolCatLoader	Category Loader to load data into the EntryMethodImpl.StructBiol structure.
StructBiolGenCatLoader	Category Loader to load data into the EntryMethodImpl.StructBiolGen structure.
StructBiolKeywordsCatLoader	Category Loader to load data into the EntryMethodImpl.StructBiolKeywords structure.
StructBiolViewCatLoader	Category Loader to load data into the EntryMethodImpl.StructBiolView structure.
StructCatLoader	Category Loader to load data into the EntryMethodImpl.Struct structure.
StructConfCatLoader	Category Loader to load data into the EntryMethodImpl.StructConf structure.
StructConfTypeCatLoader	Category Loader to load data into the EntryMethodImpl.StructConfType structure.
StructConnCatLoader	Category Loader to load data into the EntryMethodImpl.StructConn structure.
StructConnTypeCatLoader	Category Loader to load data into the EntryMethodImpl.StructConnType structure.
StructKeywordsCatLoader	Category Loader to load data into the EntryMethodImpl.StructKeywords structure.
StructMonDetailsCatLoader	Category Loader to load data into the EntryMethodImpl.StructMonDetails structure.
StructMonNuclCatLoader	Category Loader to load data into the EntryMethodImpl.StructMonNucl structure.
StructMonProtCatLoader	Category Loader to load data into the EntryMethodImpl.StructMonProt structure.
StructMonProtCisCatLoader	Category Loader to load data into the EntryMethodImpl.StructMonProtCis structure.
StructNcsDomCatLoader	Category Loader to load data into the EntryMethodImpl.StructNcsDom structure.
StructNcsDomLimCatLoader	Category Loader to load data into the EntryMethodImpl.StructNcsDomLim structure.
StructNcsEnsCatLoader	Category Loader to load data into the EntryMethodImpl.StructNcsEns structure.
StructNcsEnsGenCatLoader	Category Loader to load data into the EntryMethodImpl.StructNcsEnsGen structure.
StructNcsOperCatLoader	Category Loader to load data into the EntryMethodImpl.StructNcsOper structure.
StructRefCatLoader	Category Loader to load data into the EntryMethodImpl.StructRef structure.
StructRefSeqCatLoader	Category Loader to load data into the EntryMethodImpl.StructRefSeq structure.
StructRefSeqDifCatLoader	Category Loader to load data into the EntryMethodImpl.StructRefSeqDif structure.
StructSheetCatLoader	Category Loader to load data into the EntryMethodImpl.StructSheet structure.
StructSheetHbondCatLoader	Category Loader to load data into the EntryMethodImpl.StructSheetHbond structure.
StructSheetOrderCatLoader	Category Loader to load data into the EntryMethodImpl.StructSheetOrder structure.
StructSheetRangeCatLoader	Category Loader to load data into the EntryMethodImpl.StructSheetRange structure.
StructSheetTopologyCatLoader	Category Loader to load data into the EntryMethodImpl.StructSheetTopology structure.
StructSiteCatLoader	Category Loader to load data into the EntryMethodImpl.StructSite structure.
StructSiteGenCatLoader	Category Loader to load data into the EntryMethodImpl.StructSiteGen structure.
StructSiteKeywordsCatLoader	Category Loader to load data into the EntryMethodImpl.StructSiteKeywords structure.
StructSiteViewCatLoader	Category Loader to load data into the EntryMethodImpl.StructSiteView structure.
SymmetryCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.Symmetry structure.
SymmetryEquivCatLoader	Category Loader to load data into the XRayCrystallographyEntryMethodImpl.SymmetryEquiv structure.
XRayCrystallographyEntryMethodImpl	The Entry/Subentry classes contain the arrays of data structures that store all of the information known about a particular entry (i.e. an MMS structure) as well as the methods for accessing those data structures.

Package org.rcsb.openmms.loader Description

Provides classes to load macromolecular structure data files stored in mmCIF format into the MMS Entry data structure.