Serialized Form

Package org.rcsb.openmms.cifparse

Class org.rcsb.openmms.cifparse.CifParseException implements Serializable

Package org.rcsb.openmms.util

Class org.rcsb.openmms.util.MmsTranslationException implements Serializable

Package org.rcsb.openmms.meta

Class org.rcsb.openmms.meta.TransGenException implements Serializable

Package org.rcsb.openmms.apps.xconv

Class org.rcsb.openmms.apps.xconv.XConvException implements Serializable

Package org.rcsb.openmms.apps.xmc

Class org.rcsb.openmms.apps.xmc.XmlGenException implements Serializable

Package org.rcsb.openmms.apps.rdb

Class org.rcsb.openmms.apps.rdb.BaseFrame implements Serializable

Serialized Fields

ps

PanelSet ps

debug

int debug

Class org.rcsb.openmms.apps.rdb.PanelSet implements Serializable

Serialized Fields

logFileWriter

java.io.BufferedWriter logFileWriter

dbLoader

DBLoader dbLoader

dataPath

java.lang.String dataPath

manifest

java.lang.String manifest

exclude

java.lang.String exclude

con

java.sql.Connection con

dFont

java.awt.Font dFont

bdFont

java.awt.Font bdFont

tFont

java.awt.Font tFont

msgs

javax.swing.JTextArea msgs

DataDirTF

javax.swing.JTextField DataDirTF

DataManifestTF

javax.swing.JTextField DataManifestTF

ExcludeTF

javax.swing.JTextField ExcludeTF

UrlTF

javax.swing.JTextField UrlTF

DriverTF

javax.swing.JTextField DriverTF

UserTF

javax.swing.JTextField UserTF

PasswdTF

javax.swing.JTextField PasswdTF

FilenameTF

javax.swing.JTextField FilenameTF

EntriesTF

javax.swing.JTextField EntriesTF

loadListButton

javax.swing.JButton loadListButton

manifestButton

javax.swing.JButton manifestButton

singleLoadButton

javax.swing.JButton singleLoadButton

deleteButton

javax.swing.JButton deleteButton

stopButton

javax.swing.JButton stopButton

worker

SwingWorker worker

loadInProgress

boolean loadInProgress

Package org.rcsb.openmms.apps.refserv

Class org.rcsb.openmms.apps.refserv.ServFrame implements Serializable

Serialized Fields

tp

ServPanel tp

Package org.rcsb.openmms.apps.text

Class org.rcsb.openmms.apps.text.TxFrame implements Serializable

Serialized Fields

tp

TxPanel tp

debug

int debug

Class org.rcsb.openmms.apps.text.TxPanel implements Serializable

Serialized Fields

debugFileWriter

java.io.BufferedWriter debugFileWriter

msgs

javax.swing.JTextArea msgs

Package org.omg.DsLSRMacromolecularStructure

Class org.omg.DsLSRMacromolecularStructure._EntryFactoryStub implements Serializable

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream s)
                 throws java.io.IOException

writeObject

private void writeObject(java.io.ObjectOutputStream s)
                  throws java.io.IOException

Class org.omg.DsLSRMacromolecularStructure._EntryStub implements Serializable

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream s)
                 throws java.io.IOException

writeObject

private void writeObject(java.io.ObjectOutputStream s)
                  throws java.io.IOException

Class org.omg.DsLSRMacromolecularStructure.AtomIndex implements Serializable

Serialized Fields

atom

IndexId atom

seq

IndexId seq

comp

IndexId comp

asym

IndexId asym

alt

IndexId alt

Class org.omg.DsLSRMacromolecularStructure.AtomSite implements Serializable

Serialized Fields

id

java.lang.String id

type_symbol

IndexId type_symbol

label

AtomIndex label

label_entity

IndexId label_entity

cartn

VectorXYZ cartn

occupancy

float occupancy

b_iso_or_equiv

float b_iso_or_equiv

model_num

java.lang.String model_num

Class org.omg.DsLSRMacromolecularStructure.AtomSiteAnisotrop implements Serializable

Serialized Fields

b

float[][] b

b_esd

float[][] b_esd

ratio

float ratio

id

IndexId id

type_symbol

IndexId type_symbol

u

float[][] u

u_esd

float[][] u_esd

pdbx_auth_seq_id

java.lang.String pdbx_auth_seq_id

pdbx_auth_alt_id

java.lang.String pdbx_auth_alt_id

pdbx_auth_asym_id

java.lang.String pdbx_auth_asym_id

pdbx_auth_atom_id

java.lang.String pdbx_auth_atom_id

pdbx_auth_comp_id

java.lang.String pdbx_auth_comp_id

pdbx_label_seq_id

java.lang.String pdbx_label_seq_id

pdbx_label_alt_id

java.lang.String pdbx_label_alt_id

pdbx_label_asym_id

java.lang.String pdbx_label_asym_id

pdbx_label_atom_id

java.lang.String pdbx_label_atom_id

pdbx_label_comp_id

java.lang.String pdbx_label_comp_id

pdbx_PDB_ins_code

java.lang.String pdbx_PDB_ins_code

Class org.omg.DsLSRMacromolecularStructure.AtomSiteAnisotropImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.AtomSiteExt implements Serializable

Serialized Fields

attached_hydrogens

int attached_hydrogens

auth_asym_id

java.lang.String auth_asym_id

auth_atom_id

java.lang.String auth_atom_id

auth_comp_id

java.lang.String auth_comp_id

auth_seq_id

java.lang.String auth_seq_id

calc_attached_atom

java.lang.String calc_attached_atom

occupancy_esd

float occupancy_esd

pdbx_PDB_ins_code

java.lang.String pdbx_PDB_ins_code

Class org.omg.DsLSRMacromolecularStructure.AtomType implements Serializable

Serialized Fields

analytical_mass_percent

float analytical_mass_percent

description

java.lang.String description

number_in_cell

int number_in_cell

oxidation_number

int oxidation_number

radius_bond

float radius_bond

radius_contact

float radius_contact

scat_cromer_mann_a1

float scat_cromer_mann_a1

scat_cromer_mann_a2

float scat_cromer_mann_a2

scat_cromer_mann_a3

float scat_cromer_mann_a3

scat_cromer_mann_a4

float scat_cromer_mann_a4

scat_cromer_mann_b1

float scat_cromer_mann_b1

scat_cromer_mann_b2

float scat_cromer_mann_b2

scat_cromer_mann_b3

float scat_cromer_mann_b3

scat_cromer_mann_b4

float scat_cromer_mann_b4

scat_cromer_mann_c

float scat_cromer_mann_c

scat_dispersion_imag

float scat_dispersion_imag

scat_dispersion_real

float scat_dispersion_real

scat_length_neutron

java.lang.String scat_length_neutron

scat_source

java.lang.String scat_source

scat_versus_stol_list

java.lang.String scat_versus_stol_list

symbol

java.lang.String symbol

Class org.omg.DsLSRMacromolecularStructure.AtomTypeImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemComp implements Serializable

Serialized Fields

formula

java.lang.String formula

formula_weight

float formula_weight

id

java.lang.String id

model_details

java.lang.String model_details

model_ext_reference_file

java.lang.String model_ext_reference_file

model_source

java.lang.String model_source

mon_nstd_class

java.lang.String mon_nstd_class

mon_nstd_details

java.lang.String mon_nstd_details

mon_nstd_flag

java.lang.String mon_nstd_flag

mon_nstd_parent

java.lang.String mon_nstd_parent

mon_nstd_parent_comp

IndexId mon_nstd_parent_comp

name

java.lang.String name

number_atoms_all

int number_atoms_all

number_atoms_nh

int number_atoms_nh

one_letter_code

java.lang.String one_letter_code

three_letter_code

java.lang.String three_letter_code

type

java.lang.String type

pdbx_synonyms

java.lang.String pdbx_synonyms

pdbx_modification_details

java.lang.String pdbx_modification_details

pdbx_component_no

int pdbx_component_no

Class org.omg.DsLSRMacromolecularStructure.ChemCompAngle implements Serializable

Serialized Fields

atom_1

IndexId atom_1

atom_2

IndexId atom_2

atom_3

IndexId atom_3

comp

IndexId comp

value_angle

float value_angle

value_angle_esd

float value_angle_esd

value_dist

float value_dist

value_dist_esd

float value_dist_esd

Class org.omg.DsLSRMacromolecularStructure.ChemCompAngleImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompAtom implements Serializable

Serialized Fields

alt_atom_id

java.lang.String alt_atom_id

atom_id

java.lang.String atom_id

charge

int charge

model_cartn

VectorXYZ model_cartn

model_cartn_esd

VectorXYZ model_cartn_esd

comp

IndexId comp

partial_charge

float partial_charge

substruct_code

java.lang.String substruct_code

type_symbol

IndexId type_symbol

Class org.omg.DsLSRMacromolecularStructure.ChemCompAtomImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompBond implements Serializable

Serialized Fields

atom_1

IndexId atom_1

atom_2

IndexId atom_2

comp

IndexId comp

value_order

java.lang.String value_order

value_dist

float value_dist

value_dist_esd

float value_dist_esd

Class org.omg.DsLSRMacromolecularStructure.ChemCompBondImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompChir implements Serializable

Serialized Fields

atom

IndexId atom

atom_config

java.lang.String atom_config

id

java.lang.String id

comp

IndexId comp

number_atoms_all

int number_atoms_all

number_atoms_nh

int number_atoms_nh

volume_flag

java.lang.String volume_flag

volume_three

float volume_three

volume_three_esd

float volume_three_esd

Class org.omg.DsLSRMacromolecularStructure.ChemCompChirAtom implements Serializable

Serialized Fields

atom

IndexId atom

chir

IndexId chir

comp

IndexId comp

dev

float dev

Class org.omg.DsLSRMacromolecularStructure.ChemCompChirAtomImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompChirImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompLink implements Serializable

Serialized Fields

link

IndexId link

details

java.lang.String details

type_comp_1

IndexId type_comp_1

type_comp_2

IndexId type_comp_2

Class org.omg.DsLSRMacromolecularStructure.ChemCompLinkImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompPlane implements Serializable

Serialized Fields

id

java.lang.String id

comp

IndexId comp

number_atoms_all

int number_atoms_all

number_atoms_nh

int number_atoms_nh

Class org.omg.DsLSRMacromolecularStructure.ChemCompPlaneAtom implements Serializable

Serialized Fields

atom

IndexId atom

comp

IndexId comp

plane

IndexId plane

dist_esd

float dist_esd

Class org.omg.DsLSRMacromolecularStructure.ChemCompPlaneAtomImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompPlaneImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompTor implements Serializable

Serialized Fields

atom_1

IndexId atom_1

atom_2

IndexId atom_2

atom_3

IndexId atom_3

atom_4

IndexId atom_4

id

java.lang.String id

comp

IndexId comp

Class org.omg.DsLSRMacromolecularStructure.ChemCompTorImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemCompTorValue implements Serializable

Serialized Fields

comp

IndexId comp

tor

IndexId tor

angle

float angle

angle_esd

float angle_esd

dist

float dist

dist_esd

float dist_esd

Class org.omg.DsLSRMacromolecularStructure.ChemCompTorValueImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLink implements Serializable

Serialized Fields

id

java.lang.String id

details

java.lang.String details

Class org.omg.DsLSRMacromolecularStructure.ChemLinkAngle implements Serializable

Serialized Fields

atom_1_comp_id

java.lang.String atom_1_comp_id

atom_2_comp_id

java.lang.String atom_2_comp_id

atom_3_comp_id

java.lang.String atom_3_comp_id

atom_id_1

java.lang.String atom_id_1

atom_id_2

java.lang.String atom_id_2

atom_id_3

java.lang.String atom_id_3

link

IndexId link

value_angle

float value_angle

value_angle_esd

float value_angle_esd

value_dist

float value_dist

value_dist_esd

float value_dist_esd

Class org.omg.DsLSRMacromolecularStructure.ChemLinkAngleImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkBond implements Serializable

Serialized Fields

atom_1_comp_id

java.lang.String atom_1_comp_id

atom_2_comp_id

java.lang.String atom_2_comp_id

atom_id_1

java.lang.String atom_id_1

atom_id_2

java.lang.String atom_id_2

link

IndexId link

value_dist

float value_dist

value_dist_esd

float value_dist_esd

value_order

java.lang.String value_order

Class org.omg.DsLSRMacromolecularStructure.ChemLinkBondImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkChir implements Serializable

Serialized Fields

atom_comp_id

java.lang.String atom_comp_id

atom_id

java.lang.String atom_id

atom_config

java.lang.String atom_config

id

java.lang.String id

link

IndexId link

number_atoms_all

int number_atoms_all

number_atoms_nh

int number_atoms_nh

volume_flag

java.lang.String volume_flag

volume_three

float volume_three

volume_three_esd

float volume_three_esd

Class org.omg.DsLSRMacromolecularStructure.ChemLinkChirAtom implements Serializable

Serialized Fields

atom_comp_id

java.lang.String atom_comp_id

atom_id

java.lang.String atom_id

chir

IndexId chir

dev

float dev

Class org.omg.DsLSRMacromolecularStructure.ChemLinkChirAtomImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkChirImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkPlane implements Serializable

Serialized Fields

id

java.lang.String id

link

IndexId link

number_atoms_all

int number_atoms_all

number_atoms_nh

int number_atoms_nh

Class org.omg.DsLSRMacromolecularStructure.ChemLinkPlaneAtom implements Serializable

Serialized Fields

atom_comp_id

java.lang.String atom_comp_id

atom_id

java.lang.String atom_id

plane

IndexId plane

Class org.omg.DsLSRMacromolecularStructure.ChemLinkPlaneAtomImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkPlaneImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkTor implements Serializable

Serialized Fields

atom_1_comp_id

java.lang.String atom_1_comp_id

atom_2_comp_id

java.lang.String atom_2_comp_id

atom_3_comp_id

java.lang.String atom_3_comp_id

atom_4_comp_id

java.lang.String atom_4_comp_id

atom_id_1

java.lang.String atom_id_1

atom_id_2

java.lang.String atom_id_2

atom_id_3

java.lang.String atom_id_3

atom_id_4

java.lang.String atom_id_4

id

java.lang.String id

link

IndexId link

Class org.omg.DsLSRMacromolecularStructure.ChemLinkTorImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.ChemLinkTorValue implements Serializable

Serialized Fields

tor

IndexId tor

angle

float angle

angle_esd

float angle_esd

dist

float dist

dist_esd

float dist_esd

Class org.omg.DsLSRMacromolecularStructure.ChemLinkTorValueImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.DataAccessException implements Serializable

Serialized Fields

method_name

java.lang.String method_name

description

java.lang.String description

Class org.omg.DsLSRMacromolecularStructure.Entity implements Serializable

Serialized Fields

details

java.lang.String details

formula_weight

float formula_weight

id

java.lang.String id

src_method

java.lang.String src_method

type

java.lang.String type

pdbx_description

java.lang.String pdbx_description

pdbx_number_of_molecules

float pdbx_number_of_molecules

pdbx_parent_entity_id

java.lang.String pdbx_parent_entity_id

pdbx_mutation

java.lang.String pdbx_mutation

pdbx_fragment

java.lang.String pdbx_fragment

pdbx_ec

java.lang.String pdbx_ec

pdbx_modification

java.lang.String pdbx_modification

pdbx_formula_weight_exptl

float pdbx_formula_weight_exptl

pdbx_formula_weight_exptl_meth

java.lang.String pdbx_formula_weight_exptl_meth

Class org.omg.DsLSRMacromolecularStructure.EntityImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntityKeywords implements Serializable

Serialized Fields

entity

IndexId entity

text

java.lang.String text

pdbx_mutation

java.lang.String pdbx_mutation

pdbx_fragment

java.lang.String pdbx_fragment

pdbx_ec

java.lang.String pdbx_ec

Class org.omg.DsLSRMacromolecularStructure.EntityKeywordsImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntityLink implements Serializable

Serialized Fields

link

IndexId link

details

java.lang.String details

entity_1

IndexId entity_1

entity_2

IndexId entity_2

entity_seq_num_1

IndexId entity_seq_num_1

entity_seq_num_2

IndexId entity_seq_num_2

Class org.omg.DsLSRMacromolecularStructure.EntityLinkImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntityNameCom implements Serializable

Serialized Fields

entity

IndexId entity

name

java.lang.String name

Class org.omg.DsLSRMacromolecularStructure.EntityNameComImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntityNameSys implements Serializable

Serialized Fields

entity

IndexId entity

name

java.lang.String name

system

java.lang.String system

Class org.omg.DsLSRMacromolecularStructure.EntityNameSysImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntityPoly implements Serializable

Serialized Fields

entity

IndexId entity

nstd_chirality

java.lang.String nstd_chirality

nstd_linkage

java.lang.String nstd_linkage

nstd_monomer

java.lang.String nstd_monomer

number_of_monomers

int number_of_monomers

type

java.lang.String type

type_details

java.lang.String type_details

pdbx_strand_id

java.lang.String pdbx_strand_id

pdbx_seq_one_letter_code

java.lang.String pdbx_seq_one_letter_code

pdbx_seq_one_letter_code_can

java.lang.String pdbx_seq_one_letter_code_can

Class org.omg.DsLSRMacromolecularStructure.EntityPolyImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntityPolySeq implements Serializable

Serialized Fields

entity

IndexId entity

hetero

java.lang.String hetero

mon

IndexId mon

num

int num

Class org.omg.DsLSRMacromolecularStructure.EntitySrcGen implements Serializable

Serialized Fields

entity

IndexId entity

gene_src_common_name

java.lang.String gene_src_common_name

gene_src_details

java.lang.String gene_src_details

gene_src_genus

java.lang.String gene_src_genus

gene_src_species

java.lang.String gene_src_species

gene_src_strain

java.lang.String gene_src_strain

gene_src_tissue

java.lang.String gene_src_tissue

gene_src_tissue_fraction

java.lang.String gene_src_tissue_fraction

host_org_common_name

java.lang.String host_org_common_name

host_org_details

java.lang.String host_org_details

host_org_genus

java.lang.String host_org_genus

host_org_species

java.lang.String host_org_species

host_org_strain

java.lang.String host_org_strain

plasmid_details

java.lang.String plasmid_details

plasmid_name

java.lang.String plasmid_name

pdbx_gene_src_fragment

java.lang.String pdbx_gene_src_fragment

pdbx_gene_src_gene

java.lang.String pdbx_gene_src_gene

pdbx_gene_src_scientific_name

java.lang.String pdbx_gene_src_scientific_name

pdbx_gene_src_variant

java.lang.String pdbx_gene_src_variant

pdbx_gene_src_cell_line

java.lang.String pdbx_gene_src_cell_line

pdbx_gene_src_atcc

java.lang.String pdbx_gene_src_atcc

pdbx_gene_src_organ

java.lang.String pdbx_gene_src_organ

pdbx_gene_src_organelle

java.lang.String pdbx_gene_src_organelle

pdbx_gene_src_plasmid

java.lang.String pdbx_gene_src_plasmid

pdbx_gene_src_plasmid_name

java.lang.String pdbx_gene_src_plasmid_name

pdbx_gene_src_cell

java.lang.String pdbx_gene_src_cell

pdbx_gene_src_cellular_location

java.lang.String pdbx_gene_src_cellular_location

pdbx_host_org_gene

java.lang.String pdbx_host_org_gene

pdbx_host_org_organ

java.lang.String pdbx_host_org_organ

pdbx_host_org_variant

java.lang.String pdbx_host_org_variant

pdbx_host_org_cell_line

java.lang.String pdbx_host_org_cell_line

pdbx_host_org_atcc

java.lang.String pdbx_host_org_atcc

pdbx_host_org_culture_collection

java.lang.String pdbx_host_org_culture_collection

pdbx_host_org_cell

java.lang.String pdbx_host_org_cell

pdbx_host_org_organelle

java.lang.String pdbx_host_org_organelle

pdbx_host_org_cellular_location

java.lang.String pdbx_host_org_cellular_location

pdbx_host_org_scientific_name

java.lang.String pdbx_host_org_scientific_name

pdbx_host_org_strain

java.lang.String pdbx_host_org_strain

pdbx_host_org_tissue

java.lang.String pdbx_host_org_tissue

pdbx_host_org_tissue_fraction

java.lang.String pdbx_host_org_tissue_fraction

pdbx_host_org_vector

java.lang.String pdbx_host_org_vector

pdbx_host_org_vector_type

java.lang.String pdbx_host_org_vector_type

pdbx_description

java.lang.String pdbx_description

Class org.omg.DsLSRMacromolecularStructure.EntitySrcGenImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntitySrcNat implements Serializable

Serialized Fields

common_name

java.lang.String common_name

details

java.lang.String details

entity

IndexId entity

genus

java.lang.String genus

species

java.lang.String species

strain

java.lang.String strain

tissue

java.lang.String tissue

tissue_fraction

java.lang.String tissue_fraction

pdbx_organism_scientific

java.lang.String pdbx_organism_scientific

pdbx_secretion

java.lang.String pdbx_secretion

pdbx_fragment

java.lang.String pdbx_fragment

pdbx_variant

java.lang.String pdbx_variant

pdbx_cell_line

java.lang.String pdbx_cell_line

pdbx_atcc

java.lang.String pdbx_atcc

pdbx_cellular_location

java.lang.String pdbx_cellular_location

pdbx_organ

java.lang.String pdbx_organ

pdbx_organelle

java.lang.String pdbx_organelle

pdbx_cell

java.lang.String pdbx_cell

pdbx_plasmid_name

java.lang.String pdbx_plasmid_name

pdbx_plasmid_details

java.lang.String pdbx_plasmid_details

Class org.omg.DsLSRMacromolecularStructure.EntitySrcNatImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.EntryLink implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

id

java.lang.String id

details

java.lang.String details

Class org.omg.DsLSRMacromolecularStructure.EntryLinkImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.Geom implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

details

java.lang.String details

Class org.omg.DsLSRMacromolecularStructure.GeomAngle implements Serializable

Serialized Fields

atom_site_1

IndexId atom_site_1

atom_site_label_1

AtomIndex atom_site_label_1

atom_site_2

IndexId atom_site_2

atom_site_label_2

AtomIndex atom_site_label_2

atom_site_3

IndexId atom_site_3

atom_site_label_3

AtomIndex atom_site_label_3

atom_site_auth_1

AtomIndex atom_site_auth_1

atom_site_auth_2

AtomIndex atom_site_auth_2

atom_site_auth_3

AtomIndex atom_site_auth_3

publ_flag

java.lang.String publ_flag

site_symmetry_1

java.lang.String site_symmetry_1

site_symmetry_2

java.lang.String site_symmetry_2

site_symmetry_3

java.lang.String site_symmetry_3

value

float value

value_esd

float value_esd

pdbx_atom_site_PDB_ins_code_1

java.lang.String pdbx_atom_site_PDB_ins_code_1

pdbx_atom_site_PDB_ins_code_2

java.lang.String pdbx_atom_site_PDB_ins_code_2

pdbx_atom_site_PDB_ins_code_3

java.lang.String pdbx_atom_site_PDB_ins_code_3

pdbx_PDB_model_num

java.lang.String pdbx_PDB_model_num

Class org.omg.DsLSRMacromolecularStructure.GeomAngleImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.GeomBond implements Serializable

Serialized Fields

atom_site_1

IndexId atom_site_1

atom_site_label_1

AtomIndex atom_site_label_1

atom_site_2

IndexId atom_site_2

atom_site_label_2

AtomIndex atom_site_label_2

atom_site_auth_1

AtomIndex atom_site_auth_1

atom_site_auth_2

AtomIndex atom_site_auth_2

dist

float dist

dist_esd

float dist_esd

publ_flag

java.lang.String publ_flag

site_symmetry_1

java.lang.String site_symmetry_1

site_symmetry_2

java.lang.String site_symmetry_2

pdbx_atom_site_PDB_ins_code_1

java.lang.String pdbx_atom_site_PDB_ins_code_1

pdbx_atom_site_PDB_ins_code_2

java.lang.String pdbx_atom_site_PDB_ins_code_2

pdbx_PDB_model_num

java.lang.String pdbx_PDB_model_num

Class org.omg.DsLSRMacromolecularStructure.GeomBondImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.GeomContact implements Serializable

Serialized Fields

atom_site_1

IndexId atom_site_1

atom_site_label_1

AtomIndex atom_site_label_1

atom_site_2

IndexId atom_site_2

atom_site_label_2

AtomIndex atom_site_label_2

atom_site_auth_1

AtomIndex atom_site_auth_1

atom_site_auth_2

AtomIndex atom_site_auth_2

dist

float dist

dist_esd

float dist_esd

publ_flag

java.lang.String publ_flag

site_symmetry_1

java.lang.String site_symmetry_1

site_symmetry_2

java.lang.String site_symmetry_2

pdbx_atom_site_PDB_ins_code_1

java.lang.String pdbx_atom_site_PDB_ins_code_1

pdbx_atom_site_PDB_ins_code_2

java.lang.String pdbx_atom_site_PDB_ins_code_2

pdbx_PDB_model_num

java.lang.String pdbx_PDB_model_num

Class org.omg.DsLSRMacromolecularStructure.GeomContactImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.GeomHbond implements Serializable

Serialized Fields

angle_dha

float angle_dha

angle_dha_esd

float angle_dha_esd

atom_site_id_a

java.lang.String atom_site_id_a

atom_site_label_a

AtomIndex atom_site_label_a

atom_site_id_d

java.lang.String atom_site_id_d

atom_site_label_d

AtomIndex atom_site_label_d

atom_site_id_h

java.lang.String atom_site_id_h

atom_site_label_h

AtomIndex atom_site_label_h

atom_site_auth_a

AtomIndex atom_site_auth_a

atom_site_auth_d

AtomIndex atom_site_auth_d

atom_site_auth_h

AtomIndex atom_site_auth_h

dist_da

float dist_da

dist_da_esd

float dist_da_esd

dist_dh

float dist_dh

dist_dh_esd

float dist_dh_esd

dist_ha

float dist_ha

dist_ha_esd

float dist_ha_esd

publ_flag

java.lang.String publ_flag

site_symmetry_a

java.lang.String site_symmetry_a

site_symmetry_d

java.lang.String site_symmetry_d

site_symmetry_h

java.lang.String site_symmetry_h

Class org.omg.DsLSRMacromolecularStructure.GeomHbondImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.GeomImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.GeomTorsion implements Serializable

Serialized Fields

atom_site_1

IndexId atom_site_1

atom_site_label_1

AtomIndex atom_site_label_1

atom_site_2

IndexId atom_site_2

atom_site_label_2

AtomIndex atom_site_label_2

atom_site_3

IndexId atom_site_3

atom_site_label_3

AtomIndex atom_site_label_3

atom_site_4

IndexId atom_site_4

atom_site_label_4

AtomIndex atom_site_label_4

atom_site_auth_1

AtomIndex atom_site_auth_1

atom_site_auth_2

AtomIndex atom_site_auth_2

atom_site_auth_3

AtomIndex atom_site_auth_3

atom_site_auth_4

AtomIndex atom_site_auth_4

publ_flag

java.lang.String publ_flag

site_symmetry_1

java.lang.String site_symmetry_1

site_symmetry_2

java.lang.String site_symmetry_2

site_symmetry_3

java.lang.String site_symmetry_3

site_symmetry_4

java.lang.String site_symmetry_4

value

float value

value_esd

float value_esd

pdbx_atom_site_PDB_ins_code_1

java.lang.String pdbx_atom_site_PDB_ins_code_1

pdbx_atom_site_PDB_ins_code_2

java.lang.String pdbx_atom_site_PDB_ins_code_2

pdbx_atom_site_PDB_ins_code_3

java.lang.String pdbx_atom_site_PDB_ins_code_3

pdbx_atom_site_PDB_ins_code_4

java.lang.String pdbx_atom_site_PDB_ins_code_4

pdbx_PDB_model_num

java.lang.String pdbx_PDB_model_num

Class org.omg.DsLSRMacromolecularStructure.GeomTorsionImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.IndexId implements Serializable

Serialized Fields

id

java.lang.String id

index

int index

Class org.omg.DsLSRMacromolecularStructure.ModificationDate implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

date

long date

Class org.omg.DsLSRMacromolecularStructure.PdbxEntityAssembly implements Serializable

Serialized Fields

id

java.lang.String id

entity_id

java.lang.String entity_id

biol_id

java.lang.String biol_id

num_copies

int num_copies

Class org.omg.DsLSRMacromolecularStructure.PdbxEntityAssemblyImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.PdbxEntityName implements Serializable

Serialized Fields

entity_id

java.lang.String entity_id

name

java.lang.String name

name_type

java.lang.String name_type

Class org.omg.DsLSRMacromolecularStructure.PdbxEntityNameImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.PdbxEntitySrcSyn implements Serializable

Serialized Fields

details

java.lang.String details

entity_id

java.lang.String entity_id

Class org.omg.DsLSRMacromolecularStructure.PdbxEntitySrcSynImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.PdbxNonpolyScheme implements Serializable

Serialized Fields

id

int id

asym_id

java.lang.String asym_id

entity_id

java.lang.String entity_id

mon_id

java.lang.String mon_id

pdb_strand_id

java.lang.String pdb_strand_id

ndb_seq_num

java.lang.String ndb_seq_num

pdb_seq_num

java.lang.String pdb_seq_num

auth_seq_num

java.lang.String auth_seq_num

pdb_mon_id

java.lang.String pdb_mon_id

auth_mon_id

java.lang.String auth_mon_id

pdb_ins_code

java.lang.String pdb_ins_code

Class org.omg.DsLSRMacromolecularStructure.PdbxNonpolySchemeImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.PdbxPolySeqScheme implements Serializable

Serialized Fields

asym_id

java.lang.String asym_id

entity_id

java.lang.String entity_id

seq_id

java.lang.String seq_id

mon_id

java.lang.String mon_id

pdb_strand_id

java.lang.String pdb_strand_id

ndb_seq_num

java.lang.String ndb_seq_num

pdb_seq_num

java.lang.String pdb_seq_num

auth_seq_num

java.lang.String auth_seq_num

pdb_mon_id

java.lang.String pdb_mon_id

auth_mon_id

java.lang.String auth_mon_id

pdb_ins_code

java.lang.String pdb_ins_code

Class org.omg.DsLSRMacromolecularStructure.PdbxPolySeqSchemeImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.PdbxPrereleaseSeq implements Serializable

Serialized Fields

entity_id

java.lang.String entity_id

seq_one_letter_code

java.lang.String seq_one_letter_code

Class org.omg.DsLSRMacromolecularStructure.PdbxPrereleaseSeqImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.PdbxStructSheetHbond implements Serializable

Serialized Fields

range_id_1

java.lang.String range_id_1

range_id_2

java.lang.String range_id_2

sheet_id

java.lang.String sheet_id

range_1_label_atom_id

java.lang.String range_1_label_atom_id

range_1_label_seq_id

java.lang.String range_1_label_seq_id

range_1_label_comp_id

java.lang.String range_1_label_comp_id

range_1_label_asym_id

java.lang.String range_1_label_asym_id

range_1_auth_atom_id

java.lang.String range_1_auth_atom_id

range_1_auth_seq_id

java.lang.String range_1_auth_seq_id

range_1_auth_comp_id

java.lang.String range_1_auth_comp_id

range_1_auth_asym_id

java.lang.String range_1_auth_asym_id

range_1_PDB_ins_code

java.lang.String range_1_PDB_ins_code

range_2_label_atom_id

java.lang.String range_2_label_atom_id

range_2_label_seq_id

java.lang.String range_2_label_seq_id

range_2_label_comp_id

java.lang.String range_2_label_comp_id

range_2_label_asym_id

java.lang.String range_2_label_asym_id

range_2_auth_atom_id

java.lang.String range_2_auth_atom_id

range_2_auth_seq_id

java.lang.String range_2_auth_seq_id

range_2_auth_comp_id

java.lang.String range_2_auth_comp_id

range_2_auth_asym_id

java.lang.String range_2_auth_asym_id

range_2_PDB_ins_code

java.lang.String range_2_PDB_ins_code

Class org.omg.DsLSRMacromolecularStructure.PdbxStructSheetHbondImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.SeqIndex implements Serializable

Serialized Fields

seq

IndexId seq

comp

IndexId comp

asym

IndexId asym

alt

IndexId alt

Class org.omg.DsLSRMacromolecularStructure.StructAsym implements Serializable

Serialized Fields

details

java.lang.String details

entity

IndexId entity

id

java.lang.String id

pdbx_modified

java.lang.String pdbx_modified

pdbx_blank_PDB_chainid_flag

java.lang.String pdbx_blank_PDB_chainid_flag

Class org.omg.DsLSRMacromolecularStructure.StructAsymImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructBiol implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

pdbx_parent_biol_id

java.lang.String pdbx_parent_biol_id

Class org.omg.DsLSRMacromolecularStructure.StructBiolGen implements Serializable

Serialized Fields

asym

IndexId asym

biol

IndexId biol

details

java.lang.String details

symmetry

java.lang.String symmetry

pdbx_full_symmetry_operation

java.lang.String pdbx_full_symmetry_operation

Class org.omg.DsLSRMacromolecularStructure.StructBiolGenImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructBiolImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructBiolKeywords implements Serializable

Serialized Fields

biol

IndexId biol

text

java.lang.String text

Class org.omg.DsLSRMacromolecularStructure.StructBiolKeywordsImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructBiolView implements Serializable

Serialized Fields

biol

IndexId biol

details

java.lang.String details

id

java.lang.String id

rot_matrix

float[][] rot_matrix

Class org.omg.DsLSRMacromolecularStructure.StructBiolViewImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructConf implements Serializable

Serialized Fields

beg_label

SeqIndex beg_label

beg_auth

SeqIndex beg_auth

conf_type

IndexId conf_type

details

java.lang.String details

end_label

SeqIndex end_label

end_auth

SeqIndex end_auth

id

java.lang.String id

pdbx_beg_PDB_ins_code

java.lang.String pdbx_beg_PDB_ins_code

pdbx_end_PDB_ins_code

java.lang.String pdbx_end_PDB_ins_code

pdbx_PDB_helix_class

java.lang.String pdbx_PDB_helix_class

pdbx_PDB_helix_length

java.lang.String pdbx_PDB_helix_length

pdbx_PDB_helix_id

java.lang.String pdbx_PDB_helix_id

Class org.omg.DsLSRMacromolecularStructure.StructConfImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructConfType implements Serializable

Serialized Fields

criteria

java.lang.String criteria

id

java.lang.String id

reference

java.lang.String reference

Class org.omg.DsLSRMacromolecularStructure.StructConfTypeImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructConn implements Serializable

Serialized Fields

conn_type

IndexId conn_type

details

java.lang.String details

id

java.lang.String id

ptnr1_label

AtomIndex ptnr1_label

ptnr1_auth

AtomIndex ptnr1_auth

ptnr1_role

java.lang.String ptnr1_role

ptnr1_symmetry

java.lang.String ptnr1_symmetry

ptnr2_label

AtomIndex ptnr2_label

ptnr2_auth

AtomIndex ptnr2_auth

ptnr2_role

java.lang.String ptnr2_role

ptnr2_symmetry

java.lang.String ptnr2_symmetry

pdbx_ptnr1_PDB_ins_code

java.lang.String pdbx_ptnr1_PDB_ins_code

pdbx_ptnr1_auth_alt_id

java.lang.String pdbx_ptnr1_auth_alt_id

pdbx_ptnr1_label_alt_id

java.lang.String pdbx_ptnr1_label_alt_id

pdbx_ptnr1_standard_comp_id

java.lang.String pdbx_ptnr1_standard_comp_id

pdbx_ptnr2_PDB_ins_code

java.lang.String pdbx_ptnr2_PDB_ins_code

pdbx_ptnr2_auth_alt_id

java.lang.String pdbx_ptnr2_auth_alt_id

pdbx_ptnr2_label_alt_id

java.lang.String pdbx_ptnr2_label_alt_id

pdbx_ptnr3_auth_alt_id

java.lang.String pdbx_ptnr3_auth_alt_id

pdbx_ptnr3_auth_asym_id

java.lang.String pdbx_ptnr3_auth_asym_id

pdbx_ptnr3_auth_atom_id

java.lang.String pdbx_ptnr3_auth_atom_id

pdbx_ptnr3_auth_comp_id

java.lang.String pdbx_ptnr3_auth_comp_id

pdbx_ptnr3_PDB_ins_code

java.lang.String pdbx_ptnr3_PDB_ins_code

pdbx_ptnr3_auth_seq_id

java.lang.String pdbx_ptnr3_auth_seq_id

pdbx_ptnr3_label_alt_id

java.lang.String pdbx_ptnr3_label_alt_id

pdbx_ptnr3_label_asym_id

java.lang.String pdbx_ptnr3_label_asym_id

pdbx_ptnr3_label_atom_id

java.lang.String pdbx_ptnr3_label_atom_id

pdbx_ptnr3_label_comp_id

java.lang.String pdbx_ptnr3_label_comp_id

pdbx_ptnr3_label_seq_id

java.lang.String pdbx_ptnr3_label_seq_id

pdbx_PDB_id

java.lang.String pdbx_PDB_id

Class org.omg.DsLSRMacromolecularStructure.StructConnType implements Serializable

Serialized Fields

criteria

java.lang.String criteria

id

java.lang.String id

reference

java.lang.String reference

Class org.omg.DsLSRMacromolecularStructure.StructConnTypeImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructKeywords implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

text

java.lang.String text

pdbx_keywords

java.lang.String pdbx_keywords

Class org.omg.DsLSRMacromolecularStructure.StructKeywordsImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructMonDetails implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

prot_cis

float prot_cis

rscc

java.lang.String rscc

rsr

java.lang.String rsr

Class org.omg.DsLSRMacromolecularStructure.StructMonDetailsImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructMonNucl implements Serializable

Serialized Fields

alpha

float alpha

beta

float beta

chi1

float chi1

chi2

float chi2

delta

float delta

details

float details

epsilon

float epsilon

gamma

float gamma

label

SeqIndex label

auth

SeqIndex auth

mean_b_all

float mean_b_all

mean_b_base

float mean_b_base

mean_b_phos

float mean_b_phos

mean_b_sugar

float mean_b_sugar

nu0

float nu0

nu1

float nu1

nu2

float nu2

nu3

float nu3

nu4

float nu4

p

float p

rscc_all

float rscc_all

rscc_base

float rscc_base

rscc_phos

float rscc_phos

rscc_sugar

float rscc_sugar

rsr_all

float rsr_all

rsr_base

float rsr_base

rsr_phos

float rsr_phos

rsr_sugar

float rsr_sugar

tau0

float tau0

tau1

float tau1

tau2

float tau2

tau3

float tau3

tau4

float tau4

taum

float taum

zeta

float zeta

Class org.omg.DsLSRMacromolecularStructure.StructMonNuclImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructMonProt implements Serializable

Serialized Fields

chi1

float chi1

chi2

float chi2

chi3

float chi3

chi4

float chi4

chi5

float chi5

details

float details

label

SeqIndex label

auth

SeqIndex auth

rscc_all

float rscc_all

rscc_main

float rscc_main

rscc_side

float rscc_side

rsr_all

float rsr_all

rsr_main

float rsr_main

rsr_side

float rsr_side

mean_b_all

float mean_b_all

mean_b_main

float mean_b_main

mean_b_side

float mean_b_side

omega

float omega

phi

float phi

psi

float psi

Class org.omg.DsLSRMacromolecularStructure.StructMonProtCis implements Serializable

Serialized Fields

label

SeqIndex label

auth

SeqIndex auth

pdbx_auth_asym_id_2

java.lang.String pdbx_auth_asym_id_2

pdbx_auth_comp_id_2

java.lang.String pdbx_auth_comp_id_2

pdbx_auth_seq_id_2

java.lang.String pdbx_auth_seq_id_2

pdbx_label_asym_id_2

java.lang.String pdbx_label_asym_id_2

pdbx_label_comp_id_2

java.lang.String pdbx_label_comp_id_2

pdbx_label_seq_id_2

java.lang.String pdbx_label_seq_id_2

pdbx_PDB_ins_code

java.lang.String pdbx_PDB_ins_code

pdbx_PDB_ins_code_2

java.lang.String pdbx_PDB_ins_code_2

pdbx_PDB_model_num

java.lang.String pdbx_PDB_model_num

pdbx_omega_angle

java.lang.String pdbx_omega_angle

pdbx_id

java.lang.String pdbx_id

Class org.omg.DsLSRMacromolecularStructure.StructMonProtCisImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructMonProtImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructNcsDom implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

Class org.omg.DsLSRMacromolecularStructure.StructNcsDomImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructNcsDomLim implements Serializable

Serialized Fields

beg_label

SeqIndex beg_label

beg_auth

SeqIndex beg_auth

dom

IndexId dom

end_label

SeqIndex end_label

end_auth

SeqIndex end_auth

Class org.omg.DsLSRMacromolecularStructure.StructNcsDomLimImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructNcsEns implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

point_group

java.lang.String point_group

Class org.omg.DsLSRMacromolecularStructure.StructNcsEnsGen implements Serializable

Serialized Fields

dom_1

IndexId dom_1

dom_2

IndexId dom_2

ens

IndexId ens

oper

IndexId oper

Class org.omg.DsLSRMacromolecularStructure.StructNcsEnsGenImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructNcsEnsImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructNcsOper implements Serializable

Serialized Fields

code

java.lang.String code

details

java.lang.String details

id

java.lang.String id

matrix

float[][] matrix

vector

float[] vector

Class org.omg.DsLSRMacromolecularStructure.StructNcsOperImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructRef implements Serializable

Serialized Fields

biol

IndexId biol

db_code

java.lang.String db_code

db_name

java.lang.String db_name

details

java.lang.String details

entity

IndexId entity

id

java.lang.String id

seq_align

java.lang.String seq_align

seq_dif

java.lang.String seq_dif

pdbx_db_accession

java.lang.String pdbx_db_accession

pdbx_seq_one_letter_code

java.lang.String pdbx_seq_one_letter_code

pdbx_align_begin

java.lang.String pdbx_align_begin

Class org.omg.DsLSRMacromolecularStructure.StructRefImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructRefSeq implements Serializable

Serialized Fields

align_id

java.lang.String align_id

db_align_beg

int db_align_beg

db_align_end

int db_align_end

details

java.lang.String details

ref

IndexId ref

seq_align_beg

IndexId seq_align_beg

seq_align_end

IndexId seq_align_end

pdbx_strand_id

java.lang.String pdbx_strand_id

pdbx_db_accession

java.lang.String pdbx_db_accession

pdbx_db_align_beg_ins_code

java.lang.String pdbx_db_align_beg_ins_code

pdbx_db_align_end_ins_code

java.lang.String pdbx_db_align_end_ins_code

pdbx_PDB_id_code

java.lang.String pdbx_PDB_id_code

pdbx_auth_seq_align_beg

java.lang.String pdbx_auth_seq_align_beg

pdbx_auth_seq_align_end

java.lang.String pdbx_auth_seq_align_end

pdbx_seq_align_beg_ins_code

java.lang.String pdbx_seq_align_beg_ins_code

pdbx_seq_align_end_ins_code

java.lang.String pdbx_seq_align_end_ins_code

Class org.omg.DsLSRMacromolecularStructure.StructRefSeqDif implements Serializable

Serialized Fields

align

IndexId align

db_mon

IndexId db_mon

details

java.lang.String details

mon

IndexId mon

seq_num

IndexId seq_num

pdbx_pdb_id_code

java.lang.String pdbx_pdb_id_code

pdbx_pdb_strand_id

java.lang.String pdbx_pdb_strand_id

pdbx_pdb_ins_code

java.lang.String pdbx_pdb_ins_code

pdbx_auth_seq_num

java.lang.String pdbx_auth_seq_num

pdbx_seq_db_name

java.lang.String pdbx_seq_db_name

pdbx_seq_db_accession_code

java.lang.String pdbx_seq_db_accession_code

pdbx_seq_db_seq_num

java.lang.String pdbx_seq_db_seq_num

Class org.omg.DsLSRMacromolecularStructure.StructRefSeqDifImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructRefSeqImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSheet implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

number_strands

int number_strands

type

java.lang.String type

Class org.omg.DsLSRMacromolecularStructure.StructSheetHbond implements Serializable

Serialized Fields

range_1_beg_label_atom

IndexId range_1_beg_label_atom

range_1_beg_label_seq

IndexId range_1_beg_label_seq

range_1_end_label_atom

IndexId range_1_end_label_atom

range_1_end_label_seq

IndexId range_1_end_label_seq

range_2_beg_label_atom

IndexId range_2_beg_label_atom

range_2_beg_label_seq

IndexId range_2_beg_label_seq

range_2_end_label_atom

IndexId range_2_end_label_atom

range_2_end_label_seq

IndexId range_2_end_label_seq

range_1_beg_auth_atom

IndexId range_1_beg_auth_atom

range_1_beg_auth_seq

IndexId range_1_beg_auth_seq

range_1_end_auth_atom

IndexId range_1_end_auth_atom

range_1_end_auth_seq

IndexId range_1_end_auth_seq

range_2_beg_auth_atom

IndexId range_2_beg_auth_atom

range_2_beg_auth_seq

IndexId range_2_beg_auth_seq

range_2_end_auth_atom

IndexId range_2_end_auth_atom

range_2_end_auth_seq

IndexId range_2_end_auth_seq

range_1

IndexId range_1

range_2

IndexId range_2

sheet

IndexId sheet

pdbx_range_1_beg_auth_comp_id

java.lang.String pdbx_range_1_beg_auth_comp_id

pdbx_range_1_beg_auth_asym_id

java.lang.String pdbx_range_1_beg_auth_asym_id

pdbx_range_1_end_auth_comp_id

java.lang.String pdbx_range_1_end_auth_comp_id

pdbx_range_1_end_auth_asym_id

java.lang.String pdbx_range_1_end_auth_asym_id

pdbx_range_1_beg_label_comp_id

java.lang.String pdbx_range_1_beg_label_comp_id

pdbx_range_1_beg_label_asym_id

java.lang.String pdbx_range_1_beg_label_asym_id

pdbx_range_1_beg_PDB_ins_code

java.lang.String pdbx_range_1_beg_PDB_ins_code

pdbx_range_1_end_label_comp_id

java.lang.String pdbx_range_1_end_label_comp_id

pdbx_range_1_end_label_asym_id

java.lang.String pdbx_range_1_end_label_asym_id

pdbx_range_1_end_PDB_ins_code

java.lang.String pdbx_range_1_end_PDB_ins_code

pdbx_range_2_beg_label_comp_id

java.lang.String pdbx_range_2_beg_label_comp_id

pdbx_range_2_beg_label_asym_id

java.lang.String pdbx_range_2_beg_label_asym_id

pdbx_range_2_beg_PDB_ins_code

java.lang.String pdbx_range_2_beg_PDB_ins_code

pdbx_range_2_end_label_comp_id

java.lang.String pdbx_range_2_end_label_comp_id

pdbx_range_2_end_label_asym_id

java.lang.String pdbx_range_2_end_label_asym_id

pdbx_range_2_end_label_ins_code

java.lang.String pdbx_range_2_end_label_ins_code

Class org.omg.DsLSRMacromolecularStructure.StructSheetHbondImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSheetImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSheetOrder implements Serializable

Serialized Fields

offset

int offset

range_1

IndexId range_1

range_2

IndexId range_2

sense

java.lang.String sense

sheet

IndexId sheet

Class org.omg.DsLSRMacromolecularStructure.StructSheetOrderImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSheetRange implements Serializable

Serialized Fields

beg_label

SeqIndex beg_label

beg_auth

SeqIndex beg_auth

end_label

SeqIndex end_label

end_auth

SeqIndex end_auth

id

java.lang.String id

sheet

IndexId sheet

symmetry

java.lang.String symmetry

pdbx_beg_PDB_ins_code

java.lang.String pdbx_beg_PDB_ins_code

pdbx_end_PDB_ins_code

java.lang.String pdbx_end_PDB_ins_code

Class org.omg.DsLSRMacromolecularStructure.StructSheetRangeImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSheetTopology implements Serializable

Serialized Fields

offset

int offset

range_1

IndexId range_1

range_2

IndexId range_2

sense

java.lang.String sense

sheet

IndexId sheet

Class org.omg.DsLSRMacromolecularStructure.StructSheetTopologyImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSite implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

pdbx_num_residues

int pdbx_num_residues

Class org.omg.DsLSRMacromolecularStructure.StructSiteGen implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

label

AtomIndex label

auth

AtomIndex auth

site

IndexId site

symmetry

java.lang.String symmetry

pdbx_auth_ins_code

java.lang.String pdbx_auth_ins_code

pdbx_num_res

int pdbx_num_res

Class org.omg.DsLSRMacromolecularStructure.StructSiteGenImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSiteImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSiteKeywords implements Serializable

Serialized Fields

site

IndexId site

text

java.lang.String text

Class org.omg.DsLSRMacromolecularStructure.StructSiteKeywordsImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.StructSiteView implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

rot_matrix

float[][] rot_matrix

site

IndexId site

Class org.omg.DsLSRMacromolecularStructure.StructSiteViewImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.Structure implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

title

java.lang.String title

pdbx_descriptor

java.lang.String pdbx_descriptor

pdbx_model_details

java.lang.String pdbx_model_details

Class org.omg.DsLSRMacromolecularStructure.StructureImpl implements Serializable

Class org.omg.DsLSRMacromolecularStructure.VectorXYZ implements Serializable

Serialized Fields

x

float x

y

float y

z

float z

Package org.omg.DsLSRXRayCrystallography

Class org.omg.DsLSRXRayCrystallography._XRayCrystallographyEntryStub implements Serializable

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream s)
                 throws java.io.IOException

writeObject

private void writeObject(java.io.ObjectOutputStream s)
                  throws java.io.IOException

Class org.omg.DsLSRXRayCrystallography.AtomSites implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

cartn_transf_matrix

float[][] cartn_transf_matrix

cartn_transf_vector

float[] cartn_transf_vector

cartn_transform_axes

java.lang.String cartn_transform_axes

fract_transf_matrix

float[][] fract_transf_matrix

fract_transf_vector

float[] fract_transf_vector

solution_primary

java.lang.String solution_primary

solution_secondary

java.lang.String solution_secondary

solution_hydrogens

java.lang.String solution_hydrogens

Class org.omg.DsLSRXRayCrystallography.AtomSitesAlt implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

Class org.omg.DsLSRXRayCrystallography.AtomSitesAltEns implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

Class org.omg.DsLSRXRayCrystallography.AtomSitesAltEnsImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.AtomSitesAltGen implements Serializable

Serialized Fields

alt

IndexId alt

ens

IndexId ens

Class org.omg.DsLSRXRayCrystallography.AtomSitesAltGenImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.AtomSitesAltImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.AtomSitesFootnote implements Serializable

Serialized Fields

id

java.lang.String id

text

java.lang.String text

Class org.omg.DsLSRXRayCrystallography.AtomSitesFootnoteImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.AtomSitesImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Cell implements Serializable

Serialized Fields

cell

UnitCell cell

cell_esd

UnitCell cell_esd

entry_id

java.lang.String entry_id

details

java.lang.String details

volume

float volume

volume_esd

float volume_esd

z_pdb

int z_pdb

pdbx_unique_axis

java.lang.String pdbx_unique_axis

Class org.omg.DsLSRXRayCrystallography.CellImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.CellMeasurement implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

pressure

float pressure

pressure_esd

float pressure_esd

radiation

java.lang.String radiation

reflns_used

int reflns_used

temp

float temp

temp_esd

float temp_esd

theta_max

float theta_max

theta_min

float theta_min

wavelength

float wavelength

Class org.omg.DsLSRXRayCrystallography.CellMeasurementImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.CellMeasurementRefln implements Serializable

Serialized Fields

index

MillerIndices index

theta

float theta

Class org.omg.DsLSRXRayCrystallography.CellMeasurementReflnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Diffrn implements Serializable

Serialized Fields

ambient_environment

java.lang.String ambient_environment

ambient_pressure

float ambient_pressure

ambient_pressure_esd

float ambient_pressure_esd

ambient_temp

float ambient_temp

ambient_temp_details

java.lang.String ambient_temp_details

ambient_temp_esd

float ambient_temp_esd

crystal

IndexId crystal

crystal_support

java.lang.String crystal_support

crystal_treatment

java.lang.String crystal_treatment

details

java.lang.String details

id

java.lang.String id

Class org.omg.DsLSRXRayCrystallography.DiffrnAttenuator implements Serializable

Serialized Fields

code

java.lang.String code

scale

float scale

Class org.omg.DsLSRXRayCrystallography.DiffrnAttenuatorImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnDetector implements Serializable

Serialized Fields

details

java.lang.String details

detector

java.lang.String detector

diffrn

IndexId diffrn

dtime

float dtime

type

java.lang.String type

pdbx_collection_date

java.lang.String pdbx_collection_date

Class org.omg.DsLSRXRayCrystallography.DiffrnDetectorImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnMeasurement implements Serializable

Serialized Fields

diffrn

IndexId diffrn

details

java.lang.String details

device

java.lang.String device

device_details

java.lang.String device_details

device_type

java.lang.String device_type

method

java.lang.String method

specimen_support

java.lang.String specimen_support

Class org.omg.DsLSRXRayCrystallography.DiffrnMeasurementImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnOrientMatrix implements Serializable

Serialized Fields

diffrn

IndexId diffrn

type

java.lang.String type

ub

float[][] ub

Class org.omg.DsLSRXRayCrystallography.DiffrnOrientMatrixImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnOrientRefln implements Serializable

Serialized Fields

angle_chi

float angle_chi

angle_kappa

float angle_kappa

angle_omega

float angle_omega

angle_phi

float angle_phi

angle_psi

float angle_psi

angle_theta

float angle_theta

diffrn

IndexId diffrn

index

MillerIndices index

Class org.omg.DsLSRXRayCrystallography.DiffrnOrientReflnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnRadiation implements Serializable

Serialized Fields

collimation

java.lang.String collimation

diffrn

IndexId diffrn

filter_edge

float filter_edge

inhomogeneity

float inhomogeneity

monochromator

java.lang.String monochromator

polarisn_norm

float polarisn_norm

polarisn_ratio

float polarisn_ratio

probe

java.lang.String probe

type

java.lang.String type

xray_symbol

java.lang.String xray_symbol

wavelength_code

IndexId wavelength_code

pdbx_monochromatic_or_laue_m_l

java.lang.String pdbx_monochromatic_or_laue_m_l

pdbx_wavelength_list

java.lang.String pdbx_wavelength_list

pdbx_wavelength

java.lang.String pdbx_wavelength

pdbx_diffrn_protocol

java.lang.String pdbx_diffrn_protocol

Class org.omg.DsLSRXRayCrystallography.DiffrnRadiationImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnRadiationWavelength implements Serializable

Serialized Fields

id

java.lang.String id

wavelength

float wavelength

wt

float wt

Class org.omg.DsLSRXRayCrystallography.DiffrnRadiationWavelengthImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnRefln implements Serializable

Serialized Fields

angle_chi

float angle_chi

angle_kappa

float angle_kappa

angle_omega

float angle_omega

angle_phi

float angle_phi

angle_psi

float angle_psi

angle_theta

float angle_theta

attenuator_code

IndexId attenuator_code

counts_bg_1

int counts_bg_1

counts_bg_2

int counts_bg_2

counts_net

int counts_net

counts_peak

int counts_peak

counts_total

int counts_total

detect_slit_horiz

float detect_slit_horiz

detect_slit_vert

float detect_slit_vert

diffrn

IndexId diffrn

elapsed_time

float elapsed_time

id

java.lang.String id

index

MillerIndices index

intensity_net

float intensity_net

intensity_sigma

float intensity_sigma

scale_group_code

IndexId scale_group_code

scan_mode

java.lang.String scan_mode

scan_mode_backgd

java.lang.String scan_mode_backgd

scan_rate

float scan_rate

scan_time_backgd

float scan_time_backgd

scan_width

float scan_width

sint_over_lambda

float sint_over_lambda

standard_code

IndexId standard_code

wavelength

float wavelength

wavelength_code

IndexId wavelength_code

Class org.omg.DsLSRXRayCrystallography.DiffrnReflnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnReflns implements Serializable

Serialized Fields

av_r_equivalents

float av_r_equivalents

av_sigmaI_over_netI

float av_sigmaI_over_netI

diffrn

IndexId diffrn

limit_min

MillerIndices limit_min

limit_max

MillerIndices limit_max

number

int number

reduction_process

java.lang.String reduction_process

theta_max

float theta_max

theta_min

float theta_min

transf_matrix

float[][] transf_matrix

Class org.omg.DsLSRXRayCrystallography.DiffrnReflnsImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnScaleGroup implements Serializable

Serialized Fields

code

java.lang.String code

i_net

float i_net

Class org.omg.DsLSRXRayCrystallography.DiffrnScaleGroupImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnSource implements Serializable

Serialized Fields

current

float current

details

java.lang.String details

diffrn

IndexId diffrn

power

float power

size

java.lang.String size

source

java.lang.String source

target

java.lang.String target

type

java.lang.String type

voltage

float voltage

pdbx_synchrotron_beamline

java.lang.String pdbx_synchrotron_beamline

pdbx_synchrotron_site

java.lang.String pdbx_synchrotron_site

Class org.omg.DsLSRXRayCrystallography.DiffrnSourceImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnStandardRefln implements Serializable

Serialized Fields

code

java.lang.String code

diffrn

IndexId diffrn

index

MillerIndices index

Class org.omg.DsLSRXRayCrystallography.DiffrnStandardReflnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.DiffrnStandards implements Serializable

Serialized Fields

diffrn

IndexId diffrn

decay_percent

float decay_percent

interval_count

int interval_count

interval_time

float interval_time

number

int number

scale_sigma

float scale_sigma

Class org.omg.DsLSRXRayCrystallography.DiffrnStandardsImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Exptl implements Serializable

Serialized Fields

absorpt_coefficient_mu

float absorpt_coefficient_mu

absorpt_correction_t_max

float absorpt_correction_t_max

absorpt_correction_t_min

float absorpt_correction_t_min

absorpt_correction_type

java.lang.String absorpt_correction_type

absorpt_process_details

java.lang.String absorpt_process_details

entry_id

java.lang.String entry_id

crystals_number

int crystals_number

details

java.lang.String details

method

java.lang.String method

method_details

java.lang.String method_details

Class org.omg.DsLSRXRayCrystallography.ExptlCrystal implements Serializable

Serialized Fields

colour

java.lang.String colour

density_diffrn

float density_diffrn

density_matthews

float density_matthews

density_meas

float density_meas

density_meas_temp

float density_meas_temp

density_method

java.lang.String density_method

density_percent_sol

float density_percent_sol

description

java.lang.String description

f_000

int f_000

id

java.lang.String id

preparation

java.lang.String preparation

size_max

float size_max

size_mid

float size_mid

size_min

float size_min

size_rad

float size_rad

pdbx_crystal_image_url

java.lang.String pdbx_crystal_image_url

pdbx_crystal_image_format

java.lang.String pdbx_crystal_image_format

Class org.omg.DsLSRXRayCrystallography.ExptlCrystalFace implements Serializable

Serialized Fields

crystal

IndexId crystal

diffr_chi

float diffr_chi

diffr_kappa

float diffr_kappa

diffr_phi

float diffr_phi

diffr_psi

float diffr_psi

index

MillerIndices index

perp_dist

float perp_dist

Class org.omg.DsLSRXRayCrystallography.ExptlCrystalFaceImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.ExptlCrystalGrow implements Serializable

Serialized Fields

apparatus

java.lang.String apparatus

atmosphere

java.lang.String atmosphere

crystal

IndexId crystal

details

java.lang.String details

method

java.lang.String method

method_ref

java.lang.String method_ref

ph

float ph

pressure

float pressure

pressure_esd

float pressure_esd

seeding

java.lang.String seeding

seeding_ref

java.lang.String seeding_ref

temp

float temp

temp_details

java.lang.String temp_details

temp_esd

float temp_esd

time

java.lang.String time

pdbx_details

java.lang.String pdbx_details

pdbx_pH_range

java.lang.String pdbx_pH_range

Class org.omg.DsLSRXRayCrystallography.ExptlCrystalGrowComp implements Serializable

Serialized Fields

conc

java.lang.String conc

details

java.lang.String details

crystal

IndexId crystal

id

java.lang.String id

name

java.lang.String name

sol_id

java.lang.String sol_id

volume

java.lang.String volume

Class org.omg.DsLSRXRayCrystallography.ExptlCrystalGrowCompImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.ExptlCrystalGrowImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.ExptlCrystalImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.ExptlImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.MillerIndices implements Serializable

Serialized Fields

h

int h

k

int k

l

int l

Class org.omg.DsLSRXRayCrystallography.PdbxRefine implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

R_factor_all_no_cutoff

float R_factor_all_no_cutoff

R_factor_obs_no_cutoff

float R_factor_obs_no_cutoff

free_R_factor_4sig_cutoff

float free_R_factor_4sig_cutoff

free_R_factor_no_cutoff

float free_R_factor_no_cutoff

free_R_val_test_set_size_perc_no_cutoff

float free_R_val_test_set_size_perc_no_cutoff

free_R_val_test_set_ct_no_cutoff

float free_R_val_test_set_ct_no_cutoff

number_reflns_obs_no_cutoff

float number_reflns_obs_no_cutoff

R_factor_all_4sig_cutoff

float R_factor_all_4sig_cutoff

R_factor_obs_4sig_cutoff

float R_factor_obs_4sig_cutoff

free_R_val_4sig_cutoff

float free_R_val_4sig_cutoff

free2_R_val_test_set_size_perc_4sig_cutoff

float free2_R_val_test_set_size_perc_4sig_cutoff

free_R_val_test_set_ct_4sig_cutoff

float free_R_val_test_set_ct_4sig_cutoff

number_reflns_obs_4sig_cutoff

float number_reflns_obs_4sig_cutoff

Class org.omg.DsLSRXRayCrystallography.PdbxRefineAuxFile implements Serializable

Serialized Fields

serial_no

java.lang.String serial_no

file_name

java.lang.String file_name

file_type

java.lang.String file_type

Class org.omg.DsLSRXRayCrystallography.PdbxRefineAuxFileImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PdbxRefineImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PdbxRefineTls implements Serializable

Serialized Fields

t

float[][] t

t_esd

float[][] t_esd

l

float[][] l

l_esd

float[][] l_esd

s

float[][] s

s_esd

float[][] s_esd

Class org.omg.DsLSRXRayCrystallography.PdbxRefineTlsGroup implements Serializable

Serialized Fields

id

java.lang.String id

refine_tls_id

java.lang.String refine_tls_id

beg_label_asym

IndexId beg_label_asym

beg_label_seq

IndexId beg_label_seq

beg_auth_seq

IndexId beg_auth_seq

end_label_asym

IndexId end_label_asym

end_label_seq

IndexId end_label_seq

end_auth_seq

IndexId end_auth_seq

selection

java.lang.String selection

Class org.omg.DsLSRXRayCrystallography.PdbxRefineTlsGroupImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PdbxRefineTlsImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PdbxXplorFile implements Serializable

Serialized Fields

serial_no

java.lang.String serial_no

param_file

java.lang.String param_file

topol_file

java.lang.String topol_file

Class org.omg.DsLSRXRayCrystallography.PdbxXplorFileImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Phasing implements Serializable

Serialized Fields

method

java.lang.String method

Class org.omg.DsLSRXRayCrystallography.PhasingAveraging implements Serializable

Serialized Fields

details

java.lang.String details

entry_id

java.lang.String entry_id

method

java.lang.String method

Class org.omg.DsLSRXRayCrystallography.PhasingAveragingImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingIsomorphous implements Serializable

Serialized Fields

details

java.lang.String details

entry_id

java.lang.String entry_id

method

java.lang.String method

parent

java.lang.String parent

Class org.omg.DsLSRXRayCrystallography.PhasingIsomorphousImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMad implements Serializable

Serialized Fields

details

java.lang.String details

entry_id

java.lang.String entry_id

method

java.lang.String method

Class org.omg.DsLSRXRayCrystallography.PhasingMadClust implements Serializable

Serialized Fields

expt

IndexId expt

id

java.lang.String id

number_set

int number_set

Class org.omg.DsLSRXRayCrystallography.PhasingMadClustImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMadExpt implements Serializable

Serialized Fields

delta_delta_phi

float delta_delta_phi

delta_phi

float delta_phi

delta_phi_sigma

float delta_phi_sigma

id

java.lang.String id

mean_fom

float mean_fom

number_clust

int number_clust

r_normal_all

float r_normal_all

r_normal_anom_scat

float r_normal_anom_scat

Class org.omg.DsLSRXRayCrystallography.PhasingMadExptImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMadImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMadRatio implements Serializable

Serialized Fields

d_res_high

float d_res_high

d_res_low

float d_res_low

expt

IndexId expt

clust

IndexId clust

ratio_one_wl

float ratio_one_wl

ratio_one_wl_centric

float ratio_one_wl_centric

ratio_two_wl

float ratio_two_wl

wavelength_1

IndexId wavelength_1

wavelength_2

IndexId wavelength_2

Class org.omg.DsLSRXRayCrystallography.PhasingMadRatioImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMadSet implements Serializable

Serialized Fields

clust

IndexId clust

d_res_high

float d_res_high

d_res_low

float d_res_low

expt

IndexId expt

f_double_prime

float f_double_prime

f_prime

float f_prime

set

IndexId set

wavelength

float wavelength

wavelength_details

java.lang.String wavelength_details

Class org.omg.DsLSRXRayCrystallography.PhasingMadSetImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMir implements Serializable

Serialized Fields

details

java.lang.String details

entry_id

java.lang.String entry_id

method

java.lang.String method

Class org.omg.DsLSRXRayCrystallography.PhasingMirDer implements Serializable

Serialized Fields

d_res_high

float d_res_high

d_res_low

float d_res_low

der_set

IndexId der_set

details

java.lang.String details

id

java.lang.String id

native_set

IndexId native_set

number_of_sites

int number_of_sites

reflns_criteria

java.lang.String reflns_criteria

Class org.omg.DsLSRXRayCrystallography.PhasingMirDerImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMirDerRefln implements Serializable

Serialized Fields

der

IndexId der

f_calc

float f_calc

f_calc_au

float f_calc_au

f_meas

float f_meas

f_meas_au

float f_meas_au

f_meas_sigma

float f_meas_sigma

f_meas_sigma_au

float f_meas_sigma_au

hl_a_iso

float hl_a_iso

hl_b_iso

float hl_b_iso

hl_c_iso

float hl_c_iso

hl_d_iso

float hl_d_iso

index

MillerIndices index

phase_calc

float phase_calc

set

IndexId set

Class org.omg.DsLSRXRayCrystallography.PhasingMirDerReflnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMirDerShell implements Serializable

Serialized Fields

d_res_high

float d_res_high

d_res_low

float d_res_low

der

IndexId der

fom

float fom

ha_ampl

float ha_ampl

loc

float loc

phase

float phase

power

float power

r_cullis

float r_cullis

r_kraut

float r_kraut

reflns

int reflns

Class org.omg.DsLSRXRayCrystallography.PhasingMirDerShellImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMirDerSite implements Serializable

Serialized Fields

atom_type_symbol

IndexId atom_type_symbol

b_iso

float b_iso

b_iso_esd

float b_iso_esd

cartn

VectorXYZ cartn

cartn_esd

VectorXYZ cartn_esd

der

IndexId der

details

java.lang.String details

fract

VectorXYZ fract

fract_esd

VectorXYZ fract_esd

id

java.lang.String id

occupancy

float occupancy

Class org.omg.DsLSRXRayCrystallography.PhasingMirDerSiteImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMirImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingMirShell implements Serializable

Serialized Fields

d_res_high

float d_res_high

d_res_low

float d_res_low

fom

float fom

loc

float loc

mean_phase

float mean_phase

power

float power

r_cullis

float r_cullis

r_kraut

float r_kraut

reflns

int reflns

Class org.omg.DsLSRXRayCrystallography.PhasingMirShellImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingSet implements Serializable

Serialized Fields

cell

UnitCell cell

detector_specific

java.lang.String detector_specific

detector_type

java.lang.String detector_type

id

java.lang.String id

radiation_source_specific

java.lang.String radiation_source_specific

radiation_wavelength

float radiation_wavelength

temp

float temp

Class org.omg.DsLSRXRayCrystallography.PhasingSetImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.PhasingSetRefln implements Serializable

Serialized Fields

set

IndexId set

f_meas

float f_meas

f_meas_au

float f_meas_au

f_meas_sigma

float f_meas_sigma

f_meas_sigma_au

float f_meas_sigma_au

index

MillerIndices index

Class org.omg.DsLSRXRayCrystallography.PhasingSetReflnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Refine implements Serializable

Serialized Fields

aniso_b

float[][] aniso_b

b_iso_max

float b_iso_max

b_iso_mean

float b_iso_mean

b_iso_min

float b_iso_min

entry_id

java.lang.String entry_id

details

java.lang.String details

diff_density_max

float diff_density_max

diff_density_max_esd

float diff_density_max_esd

diff_density_min

float diff_density_min

diff_density_min_esd

float diff_density_min_esd

diff_density_rms

float diff_density_rms

diff_density_rms_esd

float diff_density_rms_esd

ls_abs_structure_details

java.lang.String ls_abs_structure_details

ls_abs_structure_flack

float ls_abs_structure_flack

ls_abs_structure_flack_esd

float ls_abs_structure_flack_esd

ls_abs_structure_rogers

float ls_abs_structure_rogers

ls_abs_structure_rogers_esd

float ls_abs_structure_rogers_esd

ls_d_res_high

float ls_d_res_high

ls_d_res_low

float ls_d_res_low

ls_extinction_coef

float ls_extinction_coef

ls_extinction_coef_esd

float ls_extinction_coef_esd

ls_extinction_expression

java.lang.String ls_extinction_expression

ls_extinction_method

java.lang.String ls_extinction_method

ls_goodness_of_fit_all

float ls_goodness_of_fit_all

ls_goodness_of_fit_all_esd

float ls_goodness_of_fit_all_esd

ls_goodness_of_fit_obs

float ls_goodness_of_fit_obs

ls_goodness_of_fit_obs_esd

float ls_goodness_of_fit_obs_esd

ls_hydrogen_treatment

java.lang.String ls_hydrogen_treatment

ls_matrix_type

java.lang.String ls_matrix_type

ls_number_constraints

int ls_number_constraints

ls_number_parameters

int ls_number_parameters

ls_number_reflns_all

int ls_number_reflns_all

ls_number_reflns_obs

int ls_number_reflns_obs

ls_number_reflns_r_free

int ls_number_reflns_r_free

ls_number_reflns_r_work

int ls_number_reflns_r_work

ls_number_restraints

int ls_number_restraints

ls_percent_reflns_obs

float ls_percent_reflns_obs

ls_percent_reflns_r_free

float ls_percent_reflns_r_free

ls_r_factor_all

float ls_r_factor_all

ls_r_factor_obs

float ls_r_factor_obs

ls_r_factor_r_free

float ls_r_factor_r_free

ls_r_factor_r_free_error

float ls_r_factor_r_free_error

ls_r_factor_r_free_error_details

java.lang.String ls_r_factor_r_free_error_details

ls_r_factor_r_work

float ls_r_factor_r_work

ls_r_fsqd_factor_obs

float ls_r_fsqd_factor_obs

ls_r_i_factor_obs

float ls_r_i_factor_obs

ls_redundancy_reflns_all

int ls_redundancy_reflns_all

ls_redundancy_reflns_obs

int ls_redundancy_reflns_obs

ls_restrained_s_all

float ls_restrained_s_all

ls_restrained_s_obs

float ls_restrained_s_obs

ls_shift_over_esd_max

float ls_shift_over_esd_max

ls_shift_over_esd_mean

float ls_shift_over_esd_mean

ls_structure_factor_coef

java.lang.String ls_structure_factor_coef

ls_weighting_details

java.lang.String ls_weighting_details

ls_weighting_scheme

java.lang.String ls_weighting_scheme

ls_wr_factor_all

float ls_wr_factor_all

ls_wr_factor_obs

float ls_wr_factor_obs

ls_wr_factor_r_free

float ls_wr_factor_r_free

ls_wr_factor_r_work

float ls_wr_factor_r_work

occupancy_max

float occupancy_max

occupancy_min

float occupancy_min

solvent_model_details

java.lang.String solvent_model_details

solvent_model_param_bsol

float solvent_model_param_bsol

solvent_model_param_ksol

float solvent_model_param_ksol

pdbx_ls_sigma_I

float pdbx_ls_sigma_I

pdbx_ls_sigma_F

float pdbx_ls_sigma_F

pdbx_data_cutoff_high_absF

float pdbx_data_cutoff_high_absF

pdbx_data_cutoff_high_rms_absF

float pdbx_data_cutoff_high_rms_absF

pdbx_data_cutoff_low_absF

float pdbx_data_cutoff_low_absF

pdbx_isotropic_thermal_model

java.lang.String pdbx_isotropic_thermal_model

pdbx_ls_cross_valid_method

java.lang.String pdbx_ls_cross_valid_method

pdbx_method_to_determine_struct

java.lang.String pdbx_method_to_determine_struct

pdbx_starting_model

java.lang.String pdbx_starting_model

pdbx_stereochemistry_target_values

java.lang.String pdbx_stereochemistry_target_values

pdbx_R_Free_selection_details

java.lang.String pdbx_R_Free_selection_details

pdbx_stereochem_target_val_spec_case

java.lang.String pdbx_stereochem_target_val_spec_case

pdbx_overall_ESU_R

float pdbx_overall_ESU_R

pdbx_overall_ESU_R_Free

float pdbx_overall_ESU_R_Free

pdbx_solvent_vdw_probe_radii

float pdbx_solvent_vdw_probe_radii

pdbx_solvent_ion_probe_radii

float pdbx_solvent_ion_probe_radii

pdbx_solvent_shrinkage_radii

float pdbx_solvent_shrinkage_radii

Class org.omg.DsLSRXRayCrystallography.RefineAnalyze implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

luzzati_coordinate_error_obs

float luzzati_coordinate_error_obs

luzzati_d_res_low_obs

float luzzati_d_res_low_obs

luzzati_sigma_a_obs

float luzzati_sigma_a_obs

luzzati_sigma_a_obs_details

java.lang.String luzzati_sigma_a_obs_details

luzzati_coordinate_error_free

float luzzati_coordinate_error_free

luzzati_d_res_low_free

float luzzati_d_res_low_free

luzzati_sigma_a_free

float luzzati_sigma_a_free

luzzati_sigma_a_free_details

java.lang.String luzzati_sigma_a_free_details

number_disordered_residues

float number_disordered_residues

occupancy_sum_hydrogen

float occupancy_sum_hydrogen

occupancy_sum_non_hydrogen

float occupancy_sum_non_hydrogen

Class org.omg.DsLSRXRayCrystallography.RefineAnalyzeImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.RefineBIso implements Serializable

Serialized Fields

class_atoms

java.lang.String class_atoms

details

java.lang.String details

treatment

java.lang.String treatment

value

float value

Class org.omg.DsLSRXRayCrystallography.RefineBIsoImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.RefineHist implements Serializable

Serialized Fields

cycle_id

java.lang.String cycle_id

details

java.lang.String details

d_res_high

float d_res_high

d_res_low

float d_res_low

number_atoms_solvent

int number_atoms_solvent

number_atoms_total

int number_atoms_total

number_reflns_all

int number_reflns_all

number_reflns_obs

int number_reflns_obs

number_reflns_R_free

int number_reflns_R_free

number_reflns_R_work

int number_reflns_R_work

r_factor_all

float r_factor_all

r_factor_obs

float r_factor_obs

r_factor_r_free

float r_factor_r_free

r_factor_r_work

float r_factor_r_work

pdbx_number_atoms_protein

int pdbx_number_atoms_protein

pdbx_number_atoms_nucleic_acid

int pdbx_number_atoms_nucleic_acid

pdbx_number_atoms_ligand

int pdbx_number_atoms_ligand

pdbx_number_atoms_lipid

int pdbx_number_atoms_lipid

pdbx_number_atoms_carb

int pdbx_number_atoms_carb

pdbx_pseudo_atom_details

java.lang.String pdbx_pseudo_atom_details

Class org.omg.DsLSRXRayCrystallography.RefineHistImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.RefineImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.RefineLsRestr implements Serializable

Serialized Fields

criterion

java.lang.String criterion

dev_ideal

float dev_ideal

number

int number

rejects

int rejects

dev_ideal_target

float dev_ideal_target

type

java.lang.String type

weight

float weight

Class org.omg.DsLSRXRayCrystallography.RefineLsRestrImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.RefineLsRestrNcs implements Serializable

Serialized Fields

dom_id

java.lang.String dom_id

ncs_model_details

java.lang.String ncs_model_details

weight_position

float weight_position

weight_b_iso

float weight_b_iso

rms_dev_position

float rms_dev_position

rms_dev_b_iso

float rms_dev_b_iso

Class org.omg.DsLSRXRayCrystallography.RefineLsRestrNcsImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.RefineLsShell implements Serializable

Serialized Fields

d_res_high

float d_res_high

d_res_low

float d_res_low

number_reflns_all

int number_reflns_all

number_reflns_obs

int number_reflns_obs

number_reflns_r_free

int number_reflns_r_free

number_reflns_r_work

int number_reflns_r_work

percent_reflns_obs

float percent_reflns_obs

percent_reflns_r_free

float percent_reflns_r_free

r_factor_all

float r_factor_all

r_factor_obs

float r_factor_obs

r_factor_r_free

float r_factor_r_free

r_factor_r_free_error

float r_factor_r_free_error

r_factor_r_work

float r_factor_r_work

redundancy_reflns_all

int redundancy_reflns_all

redundancy_reflns_obs

int redundancy_reflns_obs

wr_factor_all

float wr_factor_all

wr_factor_obs

float wr_factor_obs

wr_factor_r_free

float wr_factor_r_free

wr_factor_r_work

float wr_factor_r_work

pdbx_total_number_of_bins_used

int pdbx_total_number_of_bins_used

Class org.omg.DsLSRXRayCrystallography.RefineLsShellImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.RefineOccupancy implements Serializable

Serialized Fields

class_atoms

java.lang.String class_atoms

details

java.lang.String details

treatment

java.lang.String treatment

value

float value

Class org.omg.DsLSRXRayCrystallography.RefineOccupancyImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Refln implements Serializable

Serialized Fields

a_calc

float a_calc

a_calc_au

float a_calc_au

a_meas

float a_meas

a_meas_au

float a_meas_au

b_calc

float b_calc

b_calc_au

float b_calc_au

b_meas

float b_meas

b_meas_au

float b_meas_au

crystal

IndexId crystal

f_calc

float f_calc

f_calc_au

float f_calc_au

f_meas

float f_meas

f_meas_au

float f_meas_au

f_meas_sigma

float f_meas_sigma

f_meas_sigma_au

float f_meas_sigma_au

f_squared_calc

float f_squared_calc

f_squared_meas

float f_squared_meas

f_squared_sigma

float f_squared_sigma

fom

float fom

index

MillerIndices index

intensity_calc

float intensity_calc

intensity_meas

float intensity_meas

intensity_sigma

float intensity_sigma

mean_path_length_tbar

float mean_path_length_tbar

status

java.lang.String status

phase_calc

float phase_calc

phase_meas

float phase_meas

refinement_status

java.lang.String refinement_status

scale_group_code

IndexId scale_group_code

sint_over_lambda

float sint_over_lambda

symmetry_epsilon

int symmetry_epsilon

symmetry_multiplicity

int symmetry_multiplicity

wavelength

float wavelength

wavelength_code

IndexId wavelength_code

pdbx_F_calc_part_solvent

float pdbx_F_calc_part_solvent

pdbx_phase_calc_part_solvent

float pdbx_phase_calc_part_solvent

pdbx_F_calc_with_solvent

float pdbx_F_calc_with_solvent

pdbx_phase_calc_with_solvent

float pdbx_phase_calc_with_solvent

Class org.omg.DsLSRXRayCrystallography.ReflnImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Reflns implements Serializable

Serialized Fields

b_iso_wilson_estimate

float b_iso_wilson_estimate

entry_id

java.lang.String entry_id

data_reduction_details

java.lang.String data_reduction_details

data_reduction_method

java.lang.String data_reduction_method

d_resolution_high

float d_resolution_high

d_resolution_low

float d_resolution_low

details

java.lang.String details

limit_min

MillerIndices limit_min

limit_max

MillerIndices limit_max

number_all

int number_all

number_obs

int number_obs

observed_criterion

java.lang.String observed_criterion

observed_criterion_F_max

float observed_criterion_F_max

observed_criterion_F_min

float observed_criterion_F_min

observed_criterion_I_max

float observed_criterion_I_max

observed_criterion_I_min

float observed_criterion_I_min

observed_criterion_sigma_F

float observed_criterion_sigma_F

observed_criterion_sigma_I

float observed_criterion_sigma_I

percent_possible_obs

float percent_possible_obs

r_free_details

java.lang.String r_free_details

rmerge_f_all

float rmerge_f_all

rmerge_f_obs

float rmerge_f_obs

pdbx_redundancy

float pdbx_redundancy

pdbx_Rmerge_I_obs

float pdbx_Rmerge_I_obs

pdbx_Rsym_value

float pdbx_Rsym_value

pdbx_netI_over_av_sigmaI

float pdbx_netI_over_av_sigmaI

pdbx_chi_squared

float pdbx_chi_squared

pdbx_scaling_rejects

int pdbx_scaling_rejects

pdbx_d_res_high_opt

float pdbx_d_res_high_opt

pdbx_d_res_low_opt

float pdbx_d_res_low_opt

pdbx_d_res_opt_method

java.lang.String pdbx_d_res_opt_method

Class org.omg.DsLSRXRayCrystallography.ReflnsImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.ReflnsScale implements Serializable

Serialized Fields

group_code

java.lang.String group_code

meas_f

float meas_f

meas_f_squared

float meas_f_squared

meas_intensity

float meas_intensity

Class org.omg.DsLSRXRayCrystallography.ReflnsScaleImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.ReflnsShell implements Serializable

Serialized Fields

d_res_high

float d_res_high

d_res_low

float d_res_low

mean_i_over_sig_i_all

float mean_i_over_sig_i_all

mean_i_over_sig_i_obs

float mean_i_over_sig_i_obs

number_measured_all

int number_measured_all

number_measured_obs

int number_measured_obs

number_possible

int number_possible

number_unique_all

int number_unique_all

number_unique_obs

int number_unique_obs

percent_possible_all

float percent_possible_all

percent_possible_obs

float percent_possible_obs

rmerge_f_all

float rmerge_f_all

rmerge_f_obs

float rmerge_f_obs

rmerge_i_all

float rmerge_i_all

rmerge_i_obs

float rmerge_i_obs

pdbx_redundancy

float pdbx_redundancy

pdbx_Rsym_value

float pdbx_Rsym_value

pdbx_chi_squared

float pdbx_chi_squared

Class org.omg.DsLSRXRayCrystallography.ReflnsShellImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.Symmetry implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

cell_setting

java.lang.String cell_setting

int_tables_number

int int_tables_number

space_group_name_hall

java.lang.String space_group_name_hall

space_group_name_h_m

java.lang.String space_group_name_h_m

pdbx_full_space_group_name_h_m

java.lang.String pdbx_full_space_group_name_h_m

Class org.omg.DsLSRXRayCrystallography.SymmetryEquiv implements Serializable

Serialized Fields

id

java.lang.String id

pos_as_xyz

java.lang.String pos_as_xyz

Class org.omg.DsLSRXRayCrystallography.SymmetryEquivImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.SymmetryImpl implements Serializable

Class org.omg.DsLSRXRayCrystallography.UnitCell implements Serializable

Serialized Fields

length_a

float length_a

length_b

float length_b

length_c

float length_c

angle_alpha

float angle_alpha

angle_beta

float angle_beta

angle_gamma

float angle_gamma

Package org.omg.DsLSRMmsReference

Class org.omg.DsLSRMmsReference._MmsReferenceEntryStub implements Serializable

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream s)
                 throws java.io.IOException

writeObject

private void writeObject(java.io.ObjectOutputStream s)
                  throws java.io.IOException

Class org.omg.DsLSRMmsReference.Citation implements Serializable

Serialized Fields

abstract_text

java.lang.String abstract_text

abstract_id_CAS

java.lang.String abstract_id_CAS

book_id_isbn

java.lang.String book_id_isbn

book_publisher

java.lang.String book_publisher

book_publisher_city

java.lang.String book_publisher_city

book_title

java.lang.String book_title

coordinate_linkage

java.lang.String coordinate_linkage

country

java.lang.String country

database_id_medline

int database_id_medline

details

java.lang.String details

id

java.lang.String id

journal_abbrev

java.lang.String journal_abbrev

journal_id_astm

java.lang.String journal_id_astm

journal_id_csd

java.lang.String journal_id_csd

journal_id_issn

java.lang.String journal_id_issn

journal_full

java.lang.String journal_full

journal_issue

java.lang.String journal_issue

journal_volume

java.lang.String journal_volume

language

java.lang.String language

page_first

java.lang.String page_first

page_last

java.lang.String page_last

title

java.lang.String title

year

int year

Class org.omg.DsLSRMmsReference.CitationAuthor implements Serializable

Serialized Fields

citation

IndexId citation

name

java.lang.String name

ordinal

int ordinal

Class org.omg.DsLSRMmsReference.CitationAuthorImpl implements Serializable

Class org.omg.DsLSRMmsReference.CitationEditor implements Serializable

Serialized Fields

citation

IndexId citation

name

java.lang.String name

ordinal

int ordinal

Class org.omg.DsLSRMmsReference.CitationEditorImpl implements Serializable

Class org.omg.DsLSRMmsReference.CitationImpl implements Serializable

Class org.omg.DsLSRMmsReference.Computing implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

cell_refinement

java.lang.String cell_refinement

data_collection

java.lang.String data_collection

data_reduction

java.lang.String data_reduction

molecular_graphics

java.lang.String molecular_graphics

publication_material

java.lang.String publication_material

structure_refinement

java.lang.String structure_refinement

structure_solution

java.lang.String structure_solution

pdbx_structure_refinement_method

java.lang.String pdbx_structure_refinement_method

pdbx_data_reduction_ii

java.lang.String pdbx_data_reduction_ii

pdbx_data_reduction_ds

java.lang.String pdbx_data_reduction_ds

Class org.omg.DsLSRMmsReference.ComputingImpl implements Serializable

Class org.omg.DsLSRMmsReference.Database implements Serializable

Serialized Fields

database_id

java.lang.String database_id

database_code

java.lang.String database_code

Class org.omg.DsLSRMmsReference.DatabaseImpl implements Serializable

Class org.omg.DsLSRMmsReference.DatabasePdbCaveat implements Serializable

Serialized Fields

id

int id

text

java.lang.String text

Class org.omg.DsLSRMmsReference.DatabasePdbCaveatImpl implements Serializable

Class org.omg.DsLSRMmsReference.DatabasePdbMatrix implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

origx

float[][] origx

origx_vector

float[] origx_vector

scale

float[][] scale

scale_vector

float[] scale_vector

Class org.omg.DsLSRMmsReference.DatabasePdbMatrixImpl implements Serializable

Class org.omg.DsLSRMmsReference.DatabasePdbRemark implements Serializable

Serialized Fields

id

int id

text

java.lang.String text

Class org.omg.DsLSRMmsReference.DatabasePdbRemarkImpl implements Serializable

Class org.omg.DsLSRMmsReference.DatabasePdbRev implements Serializable

Serialized Fields

author_name

java.lang.String author_name

date

java.lang.String date

date_original

java.lang.String date_original

mod_type

int mod_type

num

int num

replaced_by

java.lang.String replaced_by

replaces

java.lang.String replaces

status

java.lang.String status

Class org.omg.DsLSRMmsReference.DatabasePdbRevImpl implements Serializable

Class org.omg.DsLSRMmsReference.DatabasePdbRevRecord implements Serializable

Serialized Fields

details

java.lang.String details

rev_num

IndexId rev_num

type

java.lang.String type

Class org.omg.DsLSRMmsReference.DatabasePdbRevRecordImpl implements Serializable

Class org.omg.DsLSRMmsReference.DatabasePdbTvect implements Serializable

Serialized Fields

details

java.lang.String details

id

java.lang.String id

vector

float[] vector

Class org.omg.DsLSRMmsReference.DatabasePdbTvectImpl implements Serializable

Class org.omg.DsLSRMmsReference.PdbxDatabaseMessage implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

message_id

java.lang.String message_id

content_type

java.lang.String content_type

message_type

java.lang.String message_type

sender

java.lang.String sender

sender_address_fax

java.lang.String sender_address_fax

sender_address_phone

java.lang.String sender_address_phone

sender_address_email

java.lang.String sender_address_email

sender_address_mail

java.lang.String sender_address_mail

receiver

java.lang.String receiver

receiver_address_fax

java.lang.String receiver_address_fax

receiver_address_phone

java.lang.String receiver_address_phone

receiver_address_email

java.lang.String receiver_address_email

receiver_address_mail

java.lang.String receiver_address_mail

message

java.lang.String message

Class org.omg.DsLSRMmsReference.PdbxDatabaseMessageImpl implements Serializable

Class org.omg.DsLSRMmsReference.PdbxDatabasePdbObsSpr implements Serializable

Serialized Fields

id

java.lang.String id

date

java.lang.String date

pdb_id

java.lang.String pdb_id

replace_pdb_id

java.lang.String replace_pdb_id

Class org.omg.DsLSRMmsReference.PdbxDatabasePdbObsSprImpl implements Serializable

Class org.omg.DsLSRMmsReference.PdbxDatabaseProc implements Serializable

Serialized Fields

entry_id

java.lang.String entry_id

cycle_id

java.lang.String cycle_id

date_begin_cycle

java.lang.String date_begin_cycle

date_end_cycle

java.lang.String date_end_cycle

details

java.lang.String details

Class org.omg.DsLSRMmsReference.PdbxDatabaseProcImpl implements Serializable

Class org.omg.DsLSRMmsReference.PdbxDatabaseRelated implements Serializable

Serialized Fields

db_name

java.lang.String db_name

details

java.lang.String details

db_id

java.lang.String db_id

content_type

java.lang.String content_type

Class org.omg.DsLSRMmsReference.PdbxDatabaseRelatedImpl implements Serializable

Class org.omg.DsLSRMmsReference.PdbxDatabaseRemark implements Serializable

Serialized Fields

id

int id

text

java.lang.String text

Class org.omg.DsLSRMmsReference.PdbxDatabaseRemarkImpl implements Serializable

Class org.omg.DsLSRMmsReference.PdbxDatabaseStatus implements Serializable

Serialized Fields

status_code

java.lang.String status_code

author_release_status_code

java.lang.String author_release_status_code

dep_release_code_coordinates

java.lang.String dep_release_code_coordinates

dep_release_code_sequence

java.lang.String dep_release_code_sequence

dep_release_code_struct_fact

java.lang.String dep_release_code_struct_fact

dep_release_code_nmr_constraints

java.lang.String dep_release_code_nmr_constraints

entry_id

java.lang.String entry_id

recvd_deposit_form

java.lang.String recvd_deposit_form

date_deposition_form

java.lang.String date_deposition_form

recvd_coordinates

java.lang.String recvd_coordinates

date_coordinates

java.lang.String date_coordinates

recvd_struct_fact

java.lang.String recvd_struct_fact

date_struct_fact

java.lang.String date_struct_fact

recvd_nmr_constraints

java.lang.String recvd_nmr_constraints

date_nmr_constraints

java.lang.String date_nmr_constraints

recvd_internal_approval

java.lang.String recvd_internal_approval

recvd_manuscript

java.lang.String recvd_manuscript

date_manuscript

java.lang.String date_manuscript

name_depositor

java.lang.String name_depositor

recvd_author_approval

java.lang.String recvd_author_approval

author_approval_type

java.lang.String author_approval_type

date_author_approval

java.lang.String date_author_approval

recvd_initial_deposition_date

java.lang.String recvd_initial_deposition_date

date_submitted

java.lang.String date_submitted

rcsb_annotator

java.lang.String rcsb_annotator

date_of_PDB_release

java.lang.String date_of_PDB_release

date_hold_coordinates

java.lang.String date_hold_coordinates

date_hold_struct_fact

java.lang.String date_hold_struct_fact

date_hold_nmr_constraints

java.lang.String date_hold_nmr_constraints

hold_for_publication

java.lang.String hold_for_publication

pdb_date_of_author_approval

java.lang.String pdb_date_of_author_approval

deposit_site

java.lang.String deposit_site

process_site

java.lang.String process_site

Class org.omg.DsLSRMmsReference.PdbxDatabaseStatusImpl implements Serializable

Class org.omg.DsLSRMmsReference.Software implements Serializable

Serialized Fields

citation

IndexId citation

classification

java.lang.String classification

compiler_name

java.lang.String compiler_name

compiler_version

java.lang.String compiler_version

contact_author

java.lang.String contact_author

contact_author_email

java.lang.String contact_author_email

date

java.lang.String date

description

java.lang.String description

dependencies

java.lang.String dependencies

hardware

java.lang.String hardware

language

java.lang.String language

location

java.lang.String location

mods

java.lang.String mods

name

java.lang.String name

os

java.lang.String os

os_version

java.lang.String os_version

type

java.lang.String type

version

java.lang.String version

Class org.omg.DsLSRMmsReference.SoftwareImpl implements Serializable