3.63. SIMPEL: Symbolic-addition phasing

invarstructure invariant options
startselection of starting phases options
phasedefining starting phase
printprint options of different stages
symbadsymbolic addition procedure options
setfomdefine figure of merit parameters
psetsspecify phase sets to be output

SIMPEL1number of generators eligible for starting set25% of total
 2number of generators eligible for divergence50% of total
 3number of generators eligible for phasing100% of total
 4minimum |E| value of input generatorsfrom bdf .inv
 5data set number of |E|'s1
 6number of phase sets output on output archive bdf4

start1control invariants used in con/divergence process   
  use triplets only in starting process trip   
  use quartets only in starting process quar   
  use triplets and quartets in starting process all   
 2probability term used in convergence process   
  use (1) described in Step 1 1   
  use (2) described in Step 1 2   
 3threshold ALTHR to accept one invariant  10th-largest
 4factor used to reduce [alpha] using ][alpha;  1
 5number of symbols to be assigned in convergence process  if no phase lines entered4
    otherwise0

invar1invariant types to be used in symbolic addition   
  use triplets only trip   
  use quartets only quar   
  use triplets and quartets all   
 2minimum A of triplets used  from bdf inv
 3minimum B of quartets used  from bdf inv
 4maximum triplets allowed per generator  100
 5maximum quartets allowed per generator  100
 6low crossvector sum limit for quartets  25% of max XV-sum (up to max of 2.5)
 7high cross vector sum limit for quartets  75% of max XV-sum (to min of 4.0)
 8 phase correction applied to negative quartets in degrees if no fragment 180
    otherwise0

print [a]1-print invariant statistics and sums invar   
  print converge order of generators converg   
  print extension of starting set into converge set extend   
  print extension of starting set into diverge set diverg   
  print symbolic addition extension process symbad   
  print application of accepted symbols to all |E|'s correl   
  print figure-of-merit details fomtest   
  print phase sets output to bdf bdfout   
Notes:
a. Entering no options implies that all print options are invoked.

symbad1probability factor used in symbolic addition   
  use sum of weighted 's (see Step 3.) wa   
  use sum of 's and invariant count an   
 2acceptance procedure if multiple symbols generated   
  accept most probable indication mult   
  reject all but single symbol indication sing   
 3no. of generators added in blocks to the symbolic process  100
 4acceptance threshold of weight for wa option  0.3

setfom1number of top phase sets applied in FOM tests [a]16
 2optimum value for QFOM0.75
 3weight of QFOM in CFOM and AMOS1
 4optimum value of RFOM1
 5weight of RFOM in CFOM and AMOS1
 6optimum value of RFAC FOM0.25
 7weight of RFAC in CFOM and AMOS1
 8optimum value of PSI0 FOM0.75
 9weight of PSI0 in CFOM and AMOS1
 10optimum value of NEGQ FOM60
 11weight of NEGQ in CFOM and AMOS1
Notes:
a. Phase sets are presorted based on the max correlation with the symbolic phases.

phase1-3hkl indices   
 4input phase (in degrees) assign as new symbolic phase 
 5Phase status optionCode  
  assign as origin defining phase odr   
  assign as enantiomorph phase edr   
  assign as symbolic phase [a] sym   
  assign as numeric phase1 set   
  remove phase from phasing process nul   
Notes:
a. The default is sym if field 4 is void; set is default if field 4 is numeric.

psets1-phase set numbers to be output to output archive bdf [a]none
Notes:
a. These numbers are selected from a previous run using identical parameters.