SSM

Entered: Wed Dec 15 2010

Operating systems: Linux; OSF; SunOS

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Application fields: Biology

Bibliography:

Description: Interactive service for comparing protein structures in 3D. Allows for: comparison of two structures, examination of a structure for similarity with the whole PDB or SCOP archives, best Ca-alignment of compared structures, download and visualization of best-superposed structures using RasMol (Unix/Linux platforms) or RasTop (MS Windows machines), linking the results to other services - OCA, SCOP, GeneCensus, FSSP, 3Dee, CATH, PDBSum, SWISS-PROT and ProtoMap. SSM (Secondary Structure Matching) on homepage for PDBe Fold.

References: http://www.ebi.ac.uk/msd-srv/ssm/