org.rcsb.openmms.cifparse
Class CifParser

java.lang.Object
  |
  +--org.rcsb.openmms.cifparse.CifParser

public class CifParser

extends java.lang.Object

Central core of the mmCIF parser. This class calls the mmCIF Tokenizer and uses the resulting tokens to parse the dictionary and data files. The data values read are passed to the Builder interface for further processing or storage.

Version:

1.7

Author:

Douglas S. Greer

Constructor Summary

CifParser()

Method Summary

Builder	getBuilder()
protected java.lang.String	itemErrorMsg(int n, DataItem d)
void	readDataBlock(CifTokenizer ct, DataItemList dil)
void	readDictionary(CifTokenizer ct, CifDictionary cd, boolean parseAll)
void	setBuilder(Builder bu)
int	startNewSaveBlock(CifTokenizer ct, java.lang.String saveName, CifDictionary cd, boolean parseAll)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CifParser

public CifParser()

Method Detail

setBuilder

public void setBuilder(Builder bu)

getBuilder

public Builder getBuilder()

readDictionary

public void readDictionary(CifTokenizer ct,
                           CifDictionary cd,
                           boolean parseAll)
                    throws CifParseException

CifParseException

startNewSaveBlock

public int startNewSaveBlock(CifTokenizer ct,
                             java.lang.String saveName,
                             CifDictionary cd,
                             boolean parseAll)
                      throws CifParseException,
                             java.io.IOException

CifParseException

java.io.IOException

readDataBlock

public void readDataBlock(CifTokenizer ct,
                          DataItemList dil)
                   throws CifParseException

CifParseException

itemErrorMsg

protected java.lang.String itemErrorMsg(int n,
                                        DataItem d)