org.rcsb.openmms.entry
Class EntryImpl
java.lang.Object
|
+--org.omg.PortableServer.Servant
|
+--org.omg.DsLSRMacromolecularStructure.EntryPOA
|
+--org.rcsb.openmms.loader.EntryMethodImpl
|
+--org.rcsb.openmms.entry.EntryImpl
- All Implemented Interfaces:
- EntryOperations, org.omg.CORBA.portable.InvokeHandler
- public class EntryImpl
- extends EntryMethodImpl
This Class, EntryImpl extends EntryMethodImpl
which extends _EntryImplBase
EntryMethodImpl is generated by MMSExpr and defines
all of the "getList" methods for the Core module.
_EntryImplBase is generated by the IDL to Java compiler for
the "Entry" Corba interface.
- Version:
- 1.10
- Author:
- Douglas S. Greer
Fields inherited from class org.rcsb.openmms.loader.EntryMethodImpl |
_atom_site_anisotrop_list, _atom_site_ext_list, _atom_site_list, _atom_type_list, _chem_comp_angle_list, _chem_comp_atom_list, _chem_comp_bond_list, _chem_comp_chir_atom_list, _chem_comp_chir_list, _chem_comp_link_list, _chem_comp_list, _chem_comp_plane_atom_list, _chem_comp_plane_list, _chem_comp_tor_list, _chem_comp_tor_value_list, _chem_link_angle_list, _chem_link_bond_list, _chem_link_chir_atom_list, _chem_link_chir_list, _chem_link_list, _chem_link_plane_atom_list, _chem_link_plane_list, _chem_link_tor_list, _chem_link_tor_value_list, _entity_keywords_list, _entity_link_list, _entity_list, _entity_name_com_list, _entity_name_sys_list, _entity_poly_list, _entity_poly_seq_list, _entity_src_gen_list, _entity_src_nat_list, _entry_link_list, _geom_angle_list, _geom_bond_list, _geom_contact_list, _geom_hbond_list, _geom_list, _geom_torsion_list, _pdbx_entity_assembly_list, _pdbx_entity_name_list, _pdbx_entity_src_syn_list, _pdbx_nonpoly_scheme_list, _pdbx_poly_seq_scheme_list, _pdbx_prerelease_seq_list, _pdbx_struct_sheet_hbond_list, _presence_flags, _struct_asym_list, _struct_biol_gen_list, _struct_biol_keywords_list, _struct_biol_list, _struct_biol_view_list, _struct_conf_list, _struct_conf_type_list, _struct_conn_list, _struct_conn_type_list, _struct_keywords_list, _struct_mon_details_list, _struct_mon_nucl_list, _struct_mon_prot_cis_list, _struct_mon_prot_list, _struct_ncs_dom_lim_list, _struct_ncs_dom_list, _struct_ncs_ens_gen_list, _struct_ncs_ens_list, _struct_ncs_oper_list, _struct_ref_list, _struct_ref_seq_dif_list, _struct_ref_seq_list, _struct_sheet_hbond_list, _struct_sheet_list, _struct_sheet_order_list, _struct_sheet_range_list, _struct_sheet_topology_list, _struct_site_gen_list, _struct_site_keywords_list, _struct_site_list, _struct_site_view_list, _structure_list, nmr, ref, xray |
Methods inherited from class org.rcsb.openmms.loader.EntryMethodImpl |
atom_site_anisotrop_list_size, atom_site_ext_list_size, atom_site_list_size, atom_type_list_size, chem_comp_angle_list_size, chem_comp_atom_list_size, chem_comp_bond_list_size, chem_comp_chir_atom_list_size, chem_comp_chir_list_size, chem_comp_link_list_size, chem_comp_list_size, chem_comp_plane_atom_list_size, chem_comp_plane_list_size, chem_comp_tor_list_size, chem_comp_tor_value_list_size, chem_link_angle_list_size, chem_link_bond_list_size, chem_link_chir_atom_list_size, chem_link_chir_list_size, chem_link_list_size, chem_link_plane_atom_list_size, chem_link_plane_list_size, chem_link_tor_list_size, chem_link_tor_value_list_size, entity_keywords_list_size, entity_link_list_size, entity_list_size, entity_name_com_list_size, entity_name_sys_list_size, entity_poly_list_size, entity_poly_seq_list_size, entity_src_gen_list_size, entity_src_nat_list_size, entry_link_list_size, geom_angle_list_size, geom_bond_list_size, geom_contact_list_size, geom_hbond_list_size, geom_list_size, geom_torsion_list_size, get_atom_site_anisotrop_list, get_atom_site_block_n, get_atom_site_ext_block_n, get_atom_site_ext_list, get_atom_site_list, get_atom_type_list, get_chem_comp_angle_list, get_chem_comp_atom_list, get_chem_comp_bond_list, get_chem_comp_chir_atom_list, get_chem_comp_chir_list, get_chem_comp_link_list, get_chem_comp_list, get_chem_comp_plane_atom_list, get_chem_comp_plane_list, get_chem_comp_tor_list, get_chem_comp_tor_value_list, get_chem_link_angle_list, get_chem_link_bond_list, get_chem_link_chir_atom_list, get_chem_link_chir_list, get_chem_link_list, get_chem_link_plane_atom_list, get_chem_link_plane_list, get_chem_link_tor_list, get_chem_link_tor_value_list, get_entity_keywords_list, get_entity_link_list, get_entity_list, get_entity_name_com_list, get_entity_name_sys_list, get_entity_poly_list, get_entity_poly_seq_block_n, get_entity_poly_seq_list, get_entity_src_gen_list, get_entity_src_nat_list, get_entry_link_list, get_geom_angle_list, get_geom_bond_list, get_geom_contact_list, get_geom_hbond_list, get_geom_list, get_geom_torsion_list, get_pdbx_entity_assembly_list, get_pdbx_entity_name_list, get_pdbx_entity_src_syn_list, get_pdbx_nonpoly_scheme_list, get_pdbx_poly_seq_scheme_list, get_pdbx_prerelease_seq_list, get_pdbx_struct_sheet_hbond_list, get_struct_asym_list, get_struct_biol_gen_list, get_struct_biol_keywords_list, get_struct_biol_list, get_struct_biol_view_list, get_struct_conf_list, get_struct_conf_type_list, get_struct_conn_list, get_struct_conn_type_list, get_struct_keywords_list, get_struct_mon_details_list, get_struct_mon_nucl_list, get_struct_mon_prot_cis_list, get_struct_mon_prot_list, get_struct_ncs_dom_lim_list, get_struct_ncs_dom_list, get_struct_ncs_ens_gen_list, get_struct_ncs_ens_list, get_struct_ncs_oper_list, get_struct_ref_list, get_struct_ref_seq_dif_list, get_struct_ref_seq_list, get_struct_sheet_hbond_list, get_struct_sheet_list, get_struct_sheet_order_list, get_struct_sheet_range_list, get_struct_sheet_topology_list, get_struct_site_gen_list, get_struct_site_keywords_list, get_struct_site_list, get_struct_site_view_list, get_structure_list, pdbx_entity_assembly_list_size, pdbx_entity_name_list_size, pdbx_entity_src_syn_list_size, pdbx_nonpoly_scheme_list_size, pdbx_poly_seq_scheme_list_size, pdbx_prerelease_seq_list_size, pdbx_struct_sheet_hbond_list_size, struct_asym_list_size, struct_biol_gen_list_size, struct_biol_keywords_list_size, struct_biol_list_size, struct_biol_view_list_size, struct_conf_list_size, struct_conf_type_list_size, struct_conn_list_size, struct_conn_type_list_size, struct_keywords_list_size, struct_mon_details_list_size, struct_mon_nucl_list_size, struct_mon_prot_cis_list_size, struct_mon_prot_list_size, struct_ncs_dom_lim_list_size, struct_ncs_dom_list_size, struct_ncs_ens_gen_list_size, struct_ncs_ens_list_size, struct_ncs_oper_list_size, struct_ref_list_size, struct_ref_seq_dif_list_size, struct_ref_seq_list_size, struct_sheet_hbond_list_size, struct_sheet_list_size, struct_sheet_order_list_size, struct_sheet_range_list_size, struct_sheet_topology_list_size, struct_site_gen_list_size, struct_site_keywords_list_size, struct_site_list_size, struct_site_view_list_size, structure_list_size |
Methods inherited from class org.omg.PortableServer.Servant |
_default_POA, _get_delegate, _get_interface_def, _is_a, _non_existent, _object_id, _orb, _poa, _set_delegate, _this_object, _this_object |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
EntryImpl
public EntryImpl(java.lang.String id,
EntryFoundry e)
EntryImpl
public EntryImpl(java.lang.String id,
EntryFoundry e,
java.lang.String path)
EntryImpl
public EntryImpl(java.lang.String id,
EntryFoundry e,
int k)
setDebug
public void setDebug(int d)
getEntryId
public java.lang.String getEntryId()
getFoundry
public EntryFoundry getFoundry()
setPresenceFlags
public void setPresenceFlags(int mod,
byte[] also)
- The existing presence flags are set to the OR of the specified flags
and the old value.
getPresenceFlags
public byte[] getPresenceFlags(int mod)
getPath
public java.lang.String getPath()
getKey
public int getKey()
- Specified by:
getKey
in class EntryMethodImpl
setDepositionDate
public void setDepositionDate(java.util.Date dt)
getDepositionDate
public java.util.Date getDepositionDate()
get_presence_flags
public byte[] get_presence_flags()
throws DataAccessException
DataAccessException
get_subentry_list
public org.omg.CosPropertyService.Property[] get_subentry_list()
throws DataAccessException
DataAccessException
initEntry
public boolean initEntry()
throws DataAccessException
- Overide initEntry dummy method in MMSExpr generated
EntryMethodImpl superclass
Returns true if all variable values have been read when the
file was inited.
- Specified by:
initEntry
in class EntryMethodImpl
DataAccessException
setCompositeSeqIndexList
public void setCompositeSeqIndexList(java.util.ArrayList sia)
- Specified by:
setCompositeSeqIndexList
in class EntryMethodImpl
setCompositeAtomIndexList
public void setCompositeAtomIndexList(java.util.ArrayList aia)
- Specified by:
setCompositeAtomIndexList
in class EntryMethodImpl
getList
public java.lang.Object[] getList(int sFlag)
throws DataAccessException
- Specified by:
getList
in class EntryMethodImpl
DataAccessException
getListSize
public int getListSize(int sFlag)
throws DataAccessException
- Specified by:
getListSize
in class EntryMethodImpl
DataAccessException
getListBlock
public java.lang.Object[] getListBlock(int sFlag,
int from,
int to)
throws DataAccessException
- Specified by:
getListBlock
in class EntryMethodImpl
DataAccessException
cacheValue
public boolean cacheValue(java.lang.Object[] var,
int sFlag)
- Specified by:
cacheValue
in class EntryMethodImpl
OpenMMS, Copyright 2001, All rights reserved