28-Jan-97 Dear mmCIF, We are very pleased to see the new version of mmCIF (0.8.11, 1997) was released on Jan. 23, 1997. It is significant that the new mmCIF includes a number of new tokens which is related to PDB REMARK3. As found by Fran and Herb Bernstein, there some differences between our (the PDB) subset of mmCIF for Structure Factors files and mmCIF dictionary, specifically: +++++++++++++++++++++++++++++++++++++++++++++++++++++++++ > 1. cifSF_dictionary has __refln.index_l > It should be _refln.index_l This is a typo in our dictionary - we need to correct it. Hopefully this typo are not in the released SF files. > 2. The PDB has been using _refln.F_meas_sigma_au > mmCIF uses _refln.F_meas_au_sigma It seems that mmCIF "_refln.F_meas_au_sigma" make more sense in which "_au" applys to "F_meas" not to "_sigma". PDB would change "_refln.F_meas_sigma_au" to "_refln.F_meas_au_sigma". ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ We will make necessary corrections in our dictionary to agree with mmCIF97, but it would be helpful to us if the mmCIF working group give more explanations on (a) the rule of using of uppercase and lowercase, e.g. F, A, B, R, MIR, MAD, MR, etc. (b) the rule of using of "." and "_"; where should be ".", or "_" or both are ok. (c) well-inform the PDB what changes have been made. best regards, Jiansheng Jiang & Joel L. Sussman ----------------------------------------------------------------------- Prof. Joel L. Sussman Protein Data Bank jls@bnl.gov Biology Department, Bldg. 463 (516) 344 6355 tel-office Brookhaven National Laboratory (516) 344 2176 fax Upton, N.Y. 11973-5000 USA & Prof. Joel L. Sussman joel@sgjs3.weizmann.ac.il Dept. of Structural Biology +972 8 934 2638 tel-office Weizmann Institute of Science +972 8 934 4159 fax Rehovot 76100 Israel http://www.weizmann.ac.il/~jsgrp/joel.html ----------------------------------------------------------------------- -- ==================================================================== Jiansheng Jiang Ph.D. | Protein Data Bank | Phone: (516) 344-6388 Biology Department, Bldg 463 | Fax: (516) 344-5751 Brookhaven National Laboratory | mailto://jiang@bnl.gov Upton NY 11973-5000, USA | http://www.pdb.bnl.gov/~jiang ==================================================================== -- ==================================================================== Jiansheng Jiang Ph.D. | Protein Data Bank | Phone: (516) 344-6388 Biology Department, Bldg 463 | Fax: (516) 344-5751 Brookhaven National Laboratory | mailto://jiang@bnl.gov Upton NY 11973-5000, USA | http://www.pdb.bnl.gov/~jiang ====================================================================