pdb2cif local dictionary

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The following six tags (in the column "Old Name") have been used in the
program pdb2cif for certain items not in the mmCIF dictionary.  In order to
conform to the recently adopted prefix scheme for local dictionaries, they
are being renamed (to the tags in the column "New Name").  The next version
of pdb2cif to be released in a few weeks will use the properly prefixed
versions of these names by default.  If you are using mmCIF data sets
produced by the versions of pdb2cif numbered 2.3.4 or earlier, please note
the change.

  Old Name                 New Name
_struct_conn.ptnr1_atom_site_id
                           _struct_conn.pdb2cif_ptnr1_atom_site_id
_struct_conn.ptnr2_atom_site_id
                           _struct_conn.pdb2cif_ptnr2_atom_site_id
_atom_site.label_model_id
                           _atom_site.pdb2cif_label_model_id
_struct_mon_prot.label_model_id
                           _struct_mon_prot.pdb2cif_label_model_id
_struct_mon_prot_cis.label_model_id
                           _struct_mon_prot_cis.pdb2cif_label_model_id
_struct_ref_seq_dif.db_seq_num
                           _struct_ref_seq_dif.pdb2cif_db_seq_num

The local dictionary defining these tags is available at

http://www.bernstein-plus-sons.com/software/pdb2cif_cif_mm_0.0.02.dic
or
ftp://bernstein-plus-sons.com/software/pdb2cif_cif_mm_0.0.02.dic

which has been submitted for mmCIF review.

For information on pdb2cif, see the SDSC, NDB or IUCR web pages and their
mirrors, e.g.
   http://www.sdsc.edu/pb/pdb2cif/pdb2cif
or http://ndb.rutgers.edu/NDB/mmcif/software/pdb2cif
or http://www.iucr.org/iucr-top/cif/software/pdb2cif



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