Uses of Class
org.omg.DsLSRMacromolecularStructure.AtomIndex

Packages that use AtomIndex

org.omg.DsLSRMacromolecularStructure

Uses of AtomIndex in org.omg.DsLSRMacromolecularStructure

Fields in org.omg.DsLSRMacromolecularStructure declared as AtomIndex

AtomIndex	StructSiteGen.label
AtomIndex	StructSiteGen.auth
AtomIndex	StructConn.ptnr1_label
AtomIndex	StructConn.ptnr1_auth
AtomIndex	StructConn.ptnr2_label
AtomIndex	StructConn.ptnr2_auth
AtomIndex	GeomTorsion.atom_site_label_1
AtomIndex	GeomTorsion.atom_site_label_2
AtomIndex	GeomTorsion.atom_site_label_3
AtomIndex	GeomTorsion.atom_site_label_4
AtomIndex	GeomTorsion.atom_site_auth_1
AtomIndex	GeomTorsion.atom_site_auth_2
AtomIndex	GeomTorsion.atom_site_auth_3
AtomIndex	GeomTorsion.atom_site_auth_4
AtomIndex	GeomHbond.atom_site_label_a
AtomIndex	GeomHbond.atom_site_label_d
AtomIndex	GeomHbond.atom_site_label_h
AtomIndex	GeomHbond.atom_site_auth_a
AtomIndex	GeomHbond.atom_site_auth_d
AtomIndex	GeomHbond.atom_site_auth_h
AtomIndex	GeomContact.atom_site_label_1
AtomIndex	GeomContact.atom_site_label_2
AtomIndex	GeomContact.atom_site_auth_1
AtomIndex	GeomContact.atom_site_auth_2
AtomIndex	GeomBond.atom_site_label_1
AtomIndex	GeomBond.atom_site_label_2
AtomIndex	GeomBond.atom_site_auth_1
AtomIndex	GeomBond.atom_site_auth_2
AtomIndex	GeomAngle.atom_site_label_1
AtomIndex	GeomAngle.atom_site_label_2
AtomIndex	GeomAngle.atom_site_label_3
AtomIndex	GeomAngle.atom_site_auth_1
AtomIndex	GeomAngle.atom_site_auth_2
AtomIndex	GeomAngle.atom_site_auth_3
AtomIndex	AtomSite.label
AtomIndex	AtomIndexHolder.value

Methods in org.omg.DsLSRMacromolecularStructure that return AtomIndex

static AtomIndex	AtomIndexHelper.extract(org.omg.CORBA.Any a)
static AtomIndex	AtomIndexHelper.read(org.omg.CORBA.portable.InputStream istream)

Methods in org.omg.DsLSRMacromolecularStructure with parameters of type AtomIndex

static void	AtomIndexHelper.insert(org.omg.CORBA.Any a, AtomIndex that)
static void	AtomIndexHelper.write(org.omg.CORBA.portable.OutputStream ostream, AtomIndex value)

Constructors in org.omg.DsLSRMacromolecularStructure with parameters of type AtomIndex

StructConn(IndexId _conn_type, java.lang.String _details, java.lang.String _id, AtomIndex _ptnr1_label, AtomIndex _ptnr1_auth, java.lang.String _ptnr1_role, java.lang.String _ptnr1_symmetry, AtomIndex _ptnr2_label, AtomIndex _ptnr2_auth, java.lang.String _ptnr2_role, java.lang.String _ptnr2_symmetry, java.lang.String _pdbx_ptnr1_PDB_ins_code, java.lang.String _pdbx_ptnr1_auth_alt_id, java.lang.String _pdbx_ptnr1_label_alt_id, java.lang.String _pdbx_ptnr1_standard_comp_id, java.lang.String _pdbx_ptnr2_PDB_ins_code, java.lang.String _pdbx_ptnr2_auth_alt_id, java.lang.String _pdbx_ptnr2_label_alt_id, java.lang.String _pdbx_ptnr3_auth_alt_id, java.lang.String _pdbx_ptnr3_auth_asym_id, java.lang.String _pdbx_ptnr3_auth_atom_id, java.lang.String _pdbx_ptnr3_auth_comp_id, java.lang.String _pdbx_ptnr3_PDB_ins_code, java.lang.String _pdbx_ptnr3_auth_seq_id, java.lang.String _pdbx_ptnr3_label_alt_id, java.lang.String _pdbx_ptnr3_label_asym_id, java.lang.String _pdbx_ptnr3_label_atom_id, java.lang.String _pdbx_ptnr3_label_comp_id, java.lang.String _pdbx_ptnr3_label_seq_id, java.lang.String _pdbx_PDB_id)

StructConn(IndexId _conn_type, java.lang.String _details, java.lang.String _id, AtomIndex _ptnr1_label, AtomIndex _ptnr1_auth, java.lang.String _ptnr1_role, java.lang.String _ptnr1_symmetry, AtomIndex _ptnr2_label, AtomIndex _ptnr2_auth, java.lang.String _ptnr2_role, java.lang.String _ptnr2_symmetry, java.lang.String _pdbx_ptnr1_PDB_ins_code, java.lang.String _pdbx_ptnr1_auth_alt_id, java.lang.String _pdbx_ptnr1_label_alt_id, java.lang.String _pdbx_ptnr1_standard_comp_id, java.lang.String _pdbx_ptnr2_PDB_ins_code, java.lang.String _pdbx_ptnr2_auth_alt_id, java.lang.String _pdbx_ptnr2_label_alt_id, java.lang.String _pdbx_ptnr3_auth_alt_id, java.lang.String _pdbx_ptnr3_auth_asym_id, java.lang.String _pdbx_ptnr3_auth_atom_id, java.lang.String _pdbx_ptnr3_auth_comp_id, java.lang.String _pdbx_ptnr3_PDB_ins_code, java.lang.String _pdbx_ptnr3_auth_seq_id, java.lang.String _pdbx_ptnr3_label_alt_id, java.lang.String _pdbx_ptnr3_label_asym_id, java.lang.String _pdbx_ptnr3_label_atom_id, java.lang.String _pdbx_ptnr3_label_comp_id, java.lang.String _pdbx_ptnr3_label_seq_id, java.lang.String _pdbx_PDB_id)

StructConn(IndexId _conn_type, java.lang.String _details, java.lang.String _id, AtomIndex _ptnr1_label, AtomIndex _ptnr1_auth, java.lang.String _ptnr1_role, java.lang.String _ptnr1_symmetry, AtomIndex _ptnr2_label, AtomIndex _ptnr2_auth, java.lang.String _ptnr2_role, java.lang.String _ptnr2_symmetry, java.lang.String _pdbx_ptnr1_PDB_ins_code, java.lang.String _pdbx_ptnr1_auth_alt_id, java.lang.String _pdbx_ptnr1_label_alt_id, java.lang.String _pdbx_ptnr1_standard_comp_id, java.lang.String _pdbx_ptnr2_PDB_ins_code, java.lang.String _pdbx_ptnr2_auth_alt_id, java.lang.String _pdbx_ptnr2_label_alt_id, java.lang.String _pdbx_ptnr3_auth_alt_id, java.lang.String _pdbx_ptnr3_auth_asym_id, java.lang.String _pdbx_ptnr3_auth_atom_id, java.lang.String _pdbx_ptnr3_auth_comp_id, java.lang.String _pdbx_ptnr3_PDB_ins_code, java.lang.String _pdbx_ptnr3_auth_seq_id, java.lang.String _pdbx_ptnr3_label_alt_id, java.lang.String _pdbx_ptnr3_label_asym_id, java.lang.String _pdbx_ptnr3_label_atom_id, java.lang.String _pdbx_ptnr3_label_comp_id, java.lang.String _pdbx_ptnr3_label_seq_id, java.lang.String _pdbx_PDB_id)

StructConn(IndexId _conn_type, java.lang.String _details, java.lang.String _id, AtomIndex _ptnr1_label, AtomIndex _ptnr1_auth, java.lang.String _ptnr1_role, java.lang.String _ptnr1_symmetry, AtomIndex _ptnr2_label, AtomIndex _ptnr2_auth, java.lang.String _ptnr2_role, java.lang.String _ptnr2_symmetry, java.lang.String _pdbx_ptnr1_PDB_ins_code, java.lang.String _pdbx_ptnr1_auth_alt_id, java.lang.String _pdbx_ptnr1_label_alt_id, java.lang.String _pdbx_ptnr1_standard_comp_id, java.lang.String _pdbx_ptnr2_PDB_ins_code, java.lang.String _pdbx_ptnr2_auth_alt_id, java.lang.String _pdbx_ptnr2_label_alt_id, java.lang.String _pdbx_ptnr3_auth_alt_id, java.lang.String _pdbx_ptnr3_auth_asym_id, java.lang.String _pdbx_ptnr3_auth_atom_id, java.lang.String _pdbx_ptnr3_auth_comp_id, java.lang.String _pdbx_ptnr3_PDB_ins_code, java.lang.String _pdbx_ptnr3_auth_seq_id, java.lang.String _pdbx_ptnr3_label_alt_id, java.lang.String _pdbx_ptnr3_label_asym_id, java.lang.String _pdbx_ptnr3_label_atom_id, java.lang.String _pdbx_ptnr3_label_comp_id, java.lang.String _pdbx_ptnr3_label_seq_id, java.lang.String _pdbx_PDB_id)

AtomSite(java.lang.String _id, IndexId _type_symbol, AtomIndex _label, IndexId _label_entity, VectorXYZ _cartn, float _occupancy, float _b_iso_or_equiv, java.lang.String _model_num)

AtomIndexHolder(AtomIndex initialValue)