org.rcsb.openmms.apps.xmc
Class Cif2Xmc

java.lang.Object
  |
  +--org.rcsb.openmms.apps.xmc.Cif2Xmc

public class Cif2Xmc

extends java.lang.Object

Program to convert mmCIF representation of MMS data to XML format

Version:

1.5

Author:

Douglas S. Greer

Field Summary

boolean	createDTD Set to true if we are writing a DTD for this Model
static int	debug
XmcWriter	xmcWriter XmcWriter writes the data files

Constructor Summary

Cif2Xmc()

Method Summary

void	execute(java.lang.String[] argv)
java.lang.String	getCifDataFilePath(java.lang.String id)
java.lang.String	idToGroup(java.lang.String id)
static void	main(java.lang.String[] argv) Looks for CreateDTD, debug=, xmldir=, data=, dct= and filelist= in argv input command line
java.lang.String	parseArguments(java.lang.String param, java.lang.String[] argv)
boolean	parseArgumentsBool(java.lang.String param, java.lang.String[] argv)
java.util.ArrayList	parseArgumentsMult(java.lang.String param, java.lang.String[] argv)
void	readCifDataFile(java.lang.String base)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

debug

public static int debug

createDTD

public boolean createDTD

Set to true if we are writing a DTD for this Model

xmcWriter

public XmcWriter xmcWriter

XmcWriter writes the data files

Constructor Detail

Cif2Xmc

public Cif2Xmc()

Method Detail

main

public static void main(java.lang.String[] argv)
                 throws java.lang.Exception

Looks for CreateDTD, debug=, xmldir=, data=, dct= and filelist= in argv input command line

java.lang.Exception

execute

public void execute(java.lang.String[] argv)

parseArguments

public java.lang.String parseArguments(java.lang.String param,
                                       java.lang.String[] argv)

parseArgumentsBool

public boolean parseArgumentsBool(java.lang.String param,
                                  java.lang.String[] argv)

parseArgumentsMult

public java.util.ArrayList parseArgumentsMult(java.lang.String param,
                                              java.lang.String[] argv)

readCifDataFile

public void readCifDataFile(java.lang.String base)
                     throws XmlGenException

XmlGenException

getCifDataFilePath

public java.lang.String getCifDataFilePath(java.lang.String id)

idToGroup

public java.lang.String idToGroup(java.lang.String id)