org.rcsb.openmms.entry
Class FileEntryFoundry

java.lang.Object
  |
  +--org.rcsb.openmms.entry.EntryFoundry
        |
        +--org.rcsb.openmms.entry.FileEntryFoundry

All Implemented Interfaces:

EntryDirectory

public class FileEntryFoundry

extends EntryFoundry

implements EntryDirectory

Implements the EntryFactory for the MMS Corba reference server.

Version:

1.11

Author:

Douglas S. Greer

Constructor Summary

FileEntryFoundry(ServerHandler a, DataItemList dl, java.lang.String dpURL, java.lang.String manfst)

Method Summary

boolean	allVariablesRead()
boolean	cacheValue(EntryImpl ei, int modType, int sFlag, java.lang.Object[] var)
protected void	checkDirectoryInit()
EntryImpl	createEntryImpl(java.lang.String id)
static FileEntryFoundry	createStandAloneFoundry(java.lang.String dp, java.lang.String manifest, org.omg.CORBA.ORB orb) Useful for applications that only wish to parse an mmCIF datafile and create an EntryImpl
java.lang.String	findDataURL(java.lang.String id)
java.lang.String[]	getEntriesInGroup(java.lang.String group)
java.lang.String[]	getEntryGroupList()
java.lang.String[]	getEntryIdList()
ModificationDate[]	getEntryModificationDates()
java.lang.Object[]	getList(EntryImpl ei, int modType, int sFlag)
java.lang.Object[]	getListBlock(EntryImpl ei, int modType, int sFlag, int from, int to)
int	getListSize(EntryImpl ei, int modType, int sFlag)
byte[]	getNativeEntryRepresentation(java.lang.String format, java.lang.String entry_id)
java.lang.String[]	getNativeFormatsSupported()
void	readEntry(EntryImpl ei)
void	readEntryData(EntryImpl ei)
static java.lang.String[]	readManifest(java.lang.String manifest, java.util.HashSet exclude)
void	setDebug(int d)

Methods inherited from class org.rcsb.openmms.entry.EntryFoundry

getMessageHandler, getNext, getOrb, getRootPoa, idToGroup, setNext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FileEntryFoundry

public FileEntryFoundry(ServerHandler a,
                        DataItemList dl,
                        java.lang.String dpURL,
                        java.lang.String manfst)

Method Detail

createStandAloneFoundry

public static FileEntryFoundry createStandAloneFoundry(java.lang.String dp,
                                                       java.lang.String manifest,
                                                       org.omg.CORBA.ORB orb)

Useful for applications that only wish to parse an mmCIF datafile and create an EntryImpl

setDebug

public void setDebug(int d)

Overrides:

setDebug in class EntryFoundry

allVariablesRead

public boolean allVariablesRead()

Specified by:

allVariablesRead in class EntryFoundry

cacheValue

public boolean cacheValue(EntryImpl ei,
                          int modType,
                          int sFlag,
                          java.lang.Object[] var)

Specified by:

cacheValue in class EntryFoundry

getList

public java.lang.Object[] getList(EntryImpl ei,
                                  int modType,
                                  int sFlag)
                           throws DataAccessException

Specified by:

getList in class EntryFoundry

DataAccessException

getListSize

public int getListSize(EntryImpl ei,
                       int modType,
                       int sFlag)
                throws DataAccessException

Specified by:

getListSize in class EntryFoundry

DataAccessException

getListBlock

public java.lang.Object[] getListBlock(EntryImpl ei,
                                       int modType,
                                       int sFlag,
                                       int from,
                                       int to)
                                throws DataAccessException

Specified by:

getListBlock in class EntryFoundry

DataAccessException

createEntryImpl

public EntryImpl createEntryImpl(java.lang.String id)
                          throws DataAccessException

Specified by:

createEntryImpl in class EntryFoundry

DataAccessException

readEntryData

public void readEntryData(EntryImpl ei)
                   throws DataAccessException

Specified by:

readEntryData in class EntryFoundry

DataAccessException

findDataURL

public java.lang.String findDataURL(java.lang.String id)
                             throws DataAccessException

DataAccessException

readEntry

public void readEntry(EntryImpl ei)
               throws DataAccessException

DataAccessException

checkDirectoryInit

protected void checkDirectoryInit()
                           throws DataAccessException

DataAccessException

readManifest

public static java.lang.String[] readManifest(java.lang.String manifest,
                                              java.util.HashSet exclude)
                                       throws java.io.IOException,
                                              java.net.MalformedURLException

java.io.IOException

java.net.MalformedURLException

getEntryIdList

public java.lang.String[] getEntryIdList()
                                  throws DataAccessException

Specified by:

getEntryIdList in interface EntryDirectory

DataAccessException

getEntryModificationDates

public ModificationDate[] getEntryModificationDates()
                                             throws DataAccessException

Specified by:

getEntryModificationDates in interface EntryDirectory

DataAccessException

getEntryGroupList

public java.lang.String[] getEntryGroupList()
                                     throws DataAccessException

Specified by:

getEntryGroupList in interface EntryDirectory

DataAccessException

getEntriesInGroup

public java.lang.String[] getEntriesInGroup(java.lang.String group)
                                     throws DataAccessException

Specified by:

getEntriesInGroup in interface EntryDirectory

DataAccessException

getNativeFormatsSupported

public java.lang.String[] getNativeFormatsSupported()

Specified by:

getNativeFormatsSupported in interface EntryDirectory

getNativeEntryRepresentation

public byte[] getNativeEntryRepresentation(java.lang.String format,
                                           java.lang.String entry_id)
                                    throws DataAccessException

Specified by:

getNativeEntryRepresentation in interface EntryDirectory

DataAccessException