org.rcsb.openmms.loader
Class EntryMethodImpl

java.lang.Object
  |
  +--org.omg.PortableServer.Servant
        |
        +--org.omg.DsLSRMacromolecularStructure.EntryPOA
              |
              +--org.rcsb.openmms.loader.EntryMethodImpl

All Implemented Interfaces:

EntryOperations, org.omg.CORBA.portable.InvokeHandler

Direct Known Subclasses:

EntryImpl

public abstract class EntryMethodImpl

extends EntryPOA

The Entry/Subentry classes contain the arrays of data structures that store all of the information known about a particular entry (i.e. an MMS structure) as well as the methods for accessing those data structures.

Generated by the program MMSExpr. Model: Std, Revision: 3.0

Date: Tue Jul 29 17:48:42 PDT 2003

Version:

OpenMMS Release V_1_5_1

Author:

Douglas S. Greer

Field Summary

AtomSiteAnisotrop[]	_atom_site_anisotrop_list
AtomSiteExt[]	_atom_site_ext_list
AtomSite[]	_atom_site_list
AtomType[]	_atom_type_list
ChemCompAngle[]	_chem_comp_angle_list
ChemCompAtom[]	_chem_comp_atom_list
ChemCompBond[]	_chem_comp_bond_list
ChemCompChirAtom[]	_chem_comp_chir_atom_list
ChemCompChir[]	_chem_comp_chir_list
ChemCompLink[]	_chem_comp_link_list
ChemComp[]	_chem_comp_list
ChemCompPlaneAtom[]	_chem_comp_plane_atom_list
ChemCompPlane[]	_chem_comp_plane_list
ChemCompTor[]	_chem_comp_tor_list
ChemCompTorValue[]	_chem_comp_tor_value_list
ChemLinkAngle[]	_chem_link_angle_list
ChemLinkBond[]	_chem_link_bond_list
ChemLinkChirAtom[]	_chem_link_chir_atom_list
ChemLinkChir[]	_chem_link_chir_list
ChemLink[]	_chem_link_list
ChemLinkPlaneAtom[]	_chem_link_plane_atom_list
ChemLinkPlane[]	_chem_link_plane_list
ChemLinkTor[]	_chem_link_tor_list
ChemLinkTorValue[]	_chem_link_tor_value_list
EntityKeywords[]	_entity_keywords_list
EntityLink[]	_entity_link_list
Entity[]	_entity_list
EntityNameCom[]	_entity_name_com_list
EntityNameSys[]	_entity_name_sys_list
EntityPoly[]	_entity_poly_list
EntityPolySeq[]	_entity_poly_seq_list
EntitySrcGen[]	_entity_src_gen_list
EntitySrcNat[]	_entity_src_nat_list
EntryLink[]	_entry_link_list
GeomAngle[]	_geom_angle_list
GeomBond[]	_geom_bond_list
GeomContact[]	_geom_contact_list
GeomHbond[]	_geom_hbond_list
Geom[]	_geom_list
GeomTorsion[]	_geom_torsion_list
PdbxEntityAssembly[]	_pdbx_entity_assembly_list
PdbxEntityName[]	_pdbx_entity_name_list
PdbxEntitySrcSyn[]	_pdbx_entity_src_syn_list
PdbxNonpolyScheme[]	_pdbx_nonpoly_scheme_list
PdbxPolySeqScheme[]	_pdbx_poly_seq_scheme_list
PdbxPrereleaseSeq[]	_pdbx_prerelease_seq_list
PdbxStructSheetHbond[]	_pdbx_struct_sheet_hbond_list
byte[]	_presence_flags
StructAsym[]	_struct_asym_list
StructBiolGen[]	_struct_biol_gen_list
StructBiolKeywords[]	_struct_biol_keywords_list
StructBiol[]	_struct_biol_list
StructBiolView[]	_struct_biol_view_list
StructConf[]	_struct_conf_list
StructConfType[]	_struct_conf_type_list
StructConn[]	_struct_conn_list
StructConnType[]	_struct_conn_type_list
StructKeywords[]	_struct_keywords_list
StructMonDetails[]	_struct_mon_details_list
StructMonNucl[]	_struct_mon_nucl_list
StructMonProtCis[]	_struct_mon_prot_cis_list
StructMonProt[]	_struct_mon_prot_list
StructNcsDomLim[]	_struct_ncs_dom_lim_list
StructNcsDom[]	_struct_ncs_dom_list
StructNcsEnsGen[]	_struct_ncs_ens_gen_list
StructNcsEns[]	_struct_ncs_ens_list
StructNcsOper[]	_struct_ncs_oper_list
StructRef[]	_struct_ref_list
StructRefSeqDif[]	_struct_ref_seq_dif_list
StructRefSeq[]	_struct_ref_seq_list
StructSheetHbond[]	_struct_sheet_hbond_list
StructSheet[]	_struct_sheet_list
StructSheetOrder[]	_struct_sheet_order_list
StructSheetRange[]	_struct_sheet_range_list
StructSheetTopology[]	_struct_sheet_topology_list
StructSiteGen[]	_struct_site_gen_list
StructSiteKeywords[]	_struct_site_keywords_list
StructSite[]	_struct_site_list
StructSiteView[]	_struct_site_view_list
Structure[]	_structure_list
NmrEntryMethodImpl	nmr
MmsReferenceEntryMethodImpl	ref
XRayCrystallographyEntryMethodImpl	xray

Constructor Summary

EntryMethodImpl()

Method Summary

int	atom_site_anisotrop_list_size()
int	atom_site_ext_list_size()
int	atom_site_list_size()
int	atom_type_list_size()
abstract boolean	cacheValue(java.lang.Object[] var, int sFlag)
int	chem_comp_angle_list_size()
int	chem_comp_atom_list_size()
int	chem_comp_bond_list_size()
int	chem_comp_chir_atom_list_size()
int	chem_comp_chir_list_size()
int	chem_comp_link_list_size()
int	chem_comp_list_size()
int	chem_comp_plane_atom_list_size()
int	chem_comp_plane_list_size()
int	chem_comp_tor_list_size()
int	chem_comp_tor_value_list_size()
int	chem_link_angle_list_size()
int	chem_link_bond_list_size()
int	chem_link_chir_atom_list_size()
int	chem_link_chir_list_size()
int	chem_link_list_size()
int	chem_link_plane_atom_list_size()
int	chem_link_plane_list_size()
int	chem_link_tor_list_size()
int	chem_link_tor_value_list_size()
int	entity_keywords_list_size()
int	entity_link_list_size()
int	entity_list_size()
int	entity_name_com_list_size()
int	entity_name_sys_list_size()
int	entity_poly_list_size()
int	entity_poly_seq_list_size()
int	entity_src_gen_list_size()
int	entity_src_nat_list_size()
int	entry_link_list_size()
int	geom_angle_list_size()
int	geom_bond_list_size()
int	geom_contact_list_size()
int	geom_hbond_list_size()
int	geom_list_size()
int	geom_torsion_list_size()
AtomSiteAnisotrop[]	get_atom_site_anisotrop_list()
AtomSite[]	get_atom_site_block_n(int from, int to)
AtomSiteExt[]	get_atom_site_ext_block_n(int from, int to)
AtomSiteExt[]	get_atom_site_ext_list()
AtomSite[]	get_atom_site_list()
AtomType[]	get_atom_type_list()
ChemCompAngle[]	get_chem_comp_angle_list()
ChemCompAtom[]	get_chem_comp_atom_list()
ChemCompBond[]	get_chem_comp_bond_list()
ChemCompChirAtom[]	get_chem_comp_chir_atom_list()
ChemCompChir[]	get_chem_comp_chir_list()
ChemCompLink[]	get_chem_comp_link_list()
ChemComp[]	get_chem_comp_list()
ChemCompPlaneAtom[]	get_chem_comp_plane_atom_list()
ChemCompPlane[]	get_chem_comp_plane_list()
ChemCompTor[]	get_chem_comp_tor_list()
ChemCompTorValue[]	get_chem_comp_tor_value_list()
ChemLinkAngle[]	get_chem_link_angle_list()
ChemLinkBond[]	get_chem_link_bond_list()
ChemLinkChirAtom[]	get_chem_link_chir_atom_list()
ChemLinkChir[]	get_chem_link_chir_list()
ChemLink[]	get_chem_link_list()
ChemLinkPlaneAtom[]	get_chem_link_plane_atom_list()
ChemLinkPlane[]	get_chem_link_plane_list()
ChemLinkTor[]	get_chem_link_tor_list()
ChemLinkTorValue[]	get_chem_link_tor_value_list()
EntityKeywords[]	get_entity_keywords_list()
EntityLink[]	get_entity_link_list()
Entity[]	get_entity_list()
EntityNameCom[]	get_entity_name_com_list()
EntityNameSys[]	get_entity_name_sys_list()
EntityPoly[]	get_entity_poly_list()
EntityPolySeq[]	get_entity_poly_seq_block_n(int from, int to)
EntityPolySeq[]	get_entity_poly_seq_list()
EntitySrcGen[]	get_entity_src_gen_list()
EntitySrcNat[]	get_entity_src_nat_list()
EntryLink[]	get_entry_link_list()
GeomAngle[]	get_geom_angle_list()
GeomBond[]	get_geom_bond_list()
GeomContact[]	get_geom_contact_list()
GeomHbond[]	get_geom_hbond_list()
Geom[]	get_geom_list()
GeomTorsion[]	get_geom_torsion_list()
PdbxEntityAssembly[]	get_pdbx_entity_assembly_list()
PdbxEntityName[]	get_pdbx_entity_name_list()
PdbxEntitySrcSyn[]	get_pdbx_entity_src_syn_list()
PdbxNonpolyScheme[]	get_pdbx_nonpoly_scheme_list()
PdbxPolySeqScheme[]	get_pdbx_poly_seq_scheme_list()
PdbxPrereleaseSeq[]	get_pdbx_prerelease_seq_list()
PdbxStructSheetHbond[]	get_pdbx_struct_sheet_hbond_list()
StructAsym[]	get_struct_asym_list()
StructBiolGen[]	get_struct_biol_gen_list()
StructBiolKeywords[]	get_struct_biol_keywords_list()
StructBiol[]	get_struct_biol_list()
StructBiolView[]	get_struct_biol_view_list()
StructConf[]	get_struct_conf_list()
StructConfType[]	get_struct_conf_type_list()
StructConn[]	get_struct_conn_list()
StructConnType[]	get_struct_conn_type_list()
StructKeywords[]	get_struct_keywords_list()
StructMonDetails[]	get_struct_mon_details_list()
StructMonNucl[]	get_struct_mon_nucl_list()
StructMonProtCis[]	get_struct_mon_prot_cis_list()
StructMonProt[]	get_struct_mon_prot_list()
StructNcsDomLim[]	get_struct_ncs_dom_lim_list()
StructNcsDom[]	get_struct_ncs_dom_list()
StructNcsEnsGen[]	get_struct_ncs_ens_gen_list()
StructNcsEns[]	get_struct_ncs_ens_list()
StructNcsOper[]	get_struct_ncs_oper_list()
StructRef[]	get_struct_ref_list()
StructRefSeqDif[]	get_struct_ref_seq_dif_list()
StructRefSeq[]	get_struct_ref_seq_list()
StructSheetHbond[]	get_struct_sheet_hbond_list()
StructSheet[]	get_struct_sheet_list()
StructSheetOrder[]	get_struct_sheet_order_list()
StructSheetRange[]	get_struct_sheet_range_list()
StructSheetTopology[]	get_struct_sheet_topology_list()
StructSiteGen[]	get_struct_site_gen_list()
StructSiteKeywords[]	get_struct_site_keywords_list()
StructSite[]	get_struct_site_list()
StructSiteView[]	get_struct_site_view_list()
Structure[]	get_structure_list()
abstract int	getKey()
abstract java.lang.Object[]	getList(int sFlag)
abstract java.lang.Object[]	getListBlock(int sFlag, int from, int to)
abstract int	getListSize(int sFlag)
abstract boolean	initEntry()
int	pdbx_entity_assembly_list_size()
int	pdbx_entity_name_list_size()
int	pdbx_entity_src_syn_list_size()
int	pdbx_nonpoly_scheme_list_size()
int	pdbx_poly_seq_scheme_list_size()
int	pdbx_prerelease_seq_list_size()
int	pdbx_struct_sheet_hbond_list_size()
abstract void	setCompositeAtomIndexList(java.util.ArrayList aia)
abstract void	setCompositeSeqIndexList(java.util.ArrayList sia)
int	struct_asym_list_size()
int	struct_biol_gen_list_size()
int	struct_biol_keywords_list_size()
int	struct_biol_list_size()
int	struct_biol_view_list_size()
int	struct_conf_list_size()
int	struct_conf_type_list_size()
int	struct_conn_list_size()
int	struct_conn_type_list_size()
int	struct_keywords_list_size()
int	struct_mon_details_list_size()
int	struct_mon_nucl_list_size()
int	struct_mon_prot_cis_list_size()
int	struct_mon_prot_list_size()
int	struct_ncs_dom_lim_list_size()
int	struct_ncs_dom_list_size()
int	struct_ncs_ens_gen_list_size()
int	struct_ncs_ens_list_size()
int	struct_ncs_oper_list_size()
int	struct_ref_list_size()
int	struct_ref_seq_dif_list_size()
int	struct_ref_seq_list_size()
int	struct_sheet_hbond_list_size()
int	struct_sheet_list_size()
int	struct_sheet_order_list_size()
int	struct_sheet_range_list_size()
int	struct_sheet_topology_list_size()
int	struct_site_gen_list_size()
int	struct_site_keywords_list_size()
int	struct_site_list_size()
int	struct_site_view_list_size()
int	structure_list_size()

Methods inherited from class org.omg.DsLSRMacromolecularStructure.EntryPOA

_all_interfaces, _invoke, _this, _this

Methods inherited from class org.omg.PortableServer.Servant

_default_POA, _get_delegate, _get_interface_def, _is_a, _non_existent, _object_id, _orb, _poa, _set_delegate, _this_object, _this_object

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.omg.DsLSRMacromolecularStructure.EntryOperations

get_presence_flags, get_subentry_list

Field Detail

_presence_flags

public byte[] _presence_flags

xray

public XRayCrystallographyEntryMethodImpl xray

nmr

public NmrEntryMethodImpl nmr

ref

public MmsReferenceEntryMethodImpl ref

_atom_site_list

public AtomSite[] _atom_site_list

_atom_site_ext_list

public AtomSiteExt[] _atom_site_ext_list

_atom_site_anisotrop_list

public AtomSiteAnisotrop[] _atom_site_anisotrop_list

_atom_type_list

public AtomType[] _atom_type_list

_chem_comp_list

public ChemComp[] _chem_comp_list

_chem_comp_angle_list

public ChemCompAngle[] _chem_comp_angle_list

_chem_comp_atom_list

public ChemCompAtom[] _chem_comp_atom_list

_chem_comp_bond_list

public ChemCompBond[] _chem_comp_bond_list

_chem_comp_chir_list

public ChemCompChir[] _chem_comp_chir_list

_chem_comp_chir_atom_list

public ChemCompChirAtom[] _chem_comp_chir_atom_list

_chem_comp_link_list

public ChemCompLink[] _chem_comp_link_list

_chem_comp_plane_list

public ChemCompPlane[] _chem_comp_plane_list

_chem_comp_plane_atom_list

public ChemCompPlaneAtom[] _chem_comp_plane_atom_list

_chem_comp_tor_list

public ChemCompTor[] _chem_comp_tor_list

_chem_comp_tor_value_list

public ChemCompTorValue[] _chem_comp_tor_value_list

_chem_link_list

public ChemLink[] _chem_link_list

_chem_link_angle_list

public ChemLinkAngle[] _chem_link_angle_list

_chem_link_bond_list

public ChemLinkBond[] _chem_link_bond_list

_chem_link_chir_list

public ChemLinkChir[] _chem_link_chir_list

_chem_link_chir_atom_list

public ChemLinkChirAtom[] _chem_link_chir_atom_list

_chem_link_plane_list

public ChemLinkPlane[] _chem_link_plane_list

_chem_link_plane_atom_list

public ChemLinkPlaneAtom[] _chem_link_plane_atom_list

_chem_link_tor_list

public ChemLinkTor[] _chem_link_tor_list

_chem_link_tor_value_list

public ChemLinkTorValue[] _chem_link_tor_value_list

_entity_list

public Entity[] _entity_list

_entity_keywords_list

public EntityKeywords[] _entity_keywords_list

_entity_link_list

public EntityLink[] _entity_link_list

_entity_name_com_list

public EntityNameCom[] _entity_name_com_list

_entity_name_sys_list

public EntityNameSys[] _entity_name_sys_list

_entity_poly_list

public EntityPoly[] _entity_poly_list

_entity_poly_seq_list

public EntityPolySeq[] _entity_poly_seq_list

_entity_src_gen_list

public EntitySrcGen[] _entity_src_gen_list

_entity_src_nat_list

public EntitySrcNat[] _entity_src_nat_list

_pdbx_entity_name_list

public PdbxEntityName[] _pdbx_entity_name_list

_pdbx_prerelease_seq_list

public PdbxPrereleaseSeq[] _pdbx_prerelease_seq_list

_pdbx_poly_seq_scheme_list

public PdbxPolySeqScheme[] _pdbx_poly_seq_scheme_list

_pdbx_nonpoly_scheme_list

public PdbxNonpolyScheme[] _pdbx_nonpoly_scheme_list

_pdbx_entity_assembly_list

public PdbxEntityAssembly[] _pdbx_entity_assembly_list

_pdbx_entity_src_syn_list

public PdbxEntitySrcSyn[] _pdbx_entity_src_syn_list

_entry_link_list

public EntryLink[] _entry_link_list

_geom_list

public Geom[] _geom_list

_geom_angle_list

public GeomAngle[] _geom_angle_list

_geom_bond_list

public GeomBond[] _geom_bond_list

_geom_contact_list

public GeomContact[] _geom_contact_list

_geom_hbond_list

public GeomHbond[] _geom_hbond_list

_geom_torsion_list

public GeomTorsion[] _geom_torsion_list

_structure_list

public Structure[] _structure_list

_struct_asym_list

public StructAsym[] _struct_asym_list

_struct_biol_list

public StructBiol[] _struct_biol_list

_struct_biol_gen_list

public StructBiolGen[] _struct_biol_gen_list

_struct_biol_keywords_list

public StructBiolKeywords[] _struct_biol_keywords_list

_struct_biol_view_list

public StructBiolView[] _struct_biol_view_list

_struct_conf_list

public StructConf[] _struct_conf_list

_struct_conf_type_list

public StructConfType[] _struct_conf_type_list

_struct_conn_list

public StructConn[] _struct_conn_list

_struct_conn_type_list

public StructConnType[] _struct_conn_type_list

_struct_keywords_list

public StructKeywords[] _struct_keywords_list

_struct_mon_details_list

public StructMonDetails[] _struct_mon_details_list

_struct_mon_nucl_list

public StructMonNucl[] _struct_mon_nucl_list

_struct_mon_prot_list

public StructMonProt[] _struct_mon_prot_list

_struct_mon_prot_cis_list

public StructMonProtCis[] _struct_mon_prot_cis_list

_struct_ncs_dom_list

public StructNcsDom[] _struct_ncs_dom_list

_struct_ncs_dom_lim_list

public StructNcsDomLim[] _struct_ncs_dom_lim_list

_struct_ncs_ens_list

public StructNcsEns[] _struct_ncs_ens_list

_struct_ncs_ens_gen_list

public StructNcsEnsGen[] _struct_ncs_ens_gen_list

_struct_ncs_oper_list

public StructNcsOper[] _struct_ncs_oper_list

_struct_ref_list

public StructRef[] _struct_ref_list

_struct_ref_seq_list

public StructRefSeq[] _struct_ref_seq_list

_struct_ref_seq_dif_list

public StructRefSeqDif[] _struct_ref_seq_dif_list

_struct_sheet_list

public StructSheet[] _struct_sheet_list

_struct_sheet_hbond_list

public StructSheetHbond[] _struct_sheet_hbond_list

_pdbx_struct_sheet_hbond_list

public PdbxStructSheetHbond[] _pdbx_struct_sheet_hbond_list

_struct_sheet_order_list

public StructSheetOrder[] _struct_sheet_order_list

_struct_sheet_range_list

public StructSheetRange[] _struct_sheet_range_list

_struct_sheet_topology_list

public StructSheetTopology[] _struct_sheet_topology_list

_struct_site_list

public StructSite[] _struct_site_list

_struct_site_gen_list

public StructSiteGen[] _struct_site_gen_list

_struct_site_keywords_list

public StructSiteKeywords[] _struct_site_keywords_list

_struct_site_view_list

public StructSiteView[] _struct_site_view_list

Constructor Detail

EntryMethodImpl

public EntryMethodImpl()

Method Detail

initEntry

public abstract boolean initEntry()
                           throws DataAccessException

DataAccessException

getList

public abstract java.lang.Object[] getList(int sFlag)
                                    throws DataAccessException

DataAccessException

getListSize

public abstract int getListSize(int sFlag)
                         throws DataAccessException

DataAccessException

getListBlock

public abstract java.lang.Object[] getListBlock(int sFlag,
                                                int from,
                                                int to)
                                         throws DataAccessException

DataAccessException

cacheValue

public abstract boolean cacheValue(java.lang.Object[] var,
                                   int sFlag)
                            throws DataAccessException

DataAccessException

getKey

public abstract int getKey()

setCompositeSeqIndexList

public abstract void setCompositeSeqIndexList(java.util.ArrayList sia)

setCompositeAtomIndexList

public abstract void setCompositeAtomIndexList(java.util.ArrayList aia)

atom_site_list_size

public int atom_site_list_size()
                        throws DataAccessException

DataAccessException

get_atom_site_list

public AtomSite[] get_atom_site_list()
                              throws DataAccessException

DataAccessException

get_atom_site_block_n

public AtomSite[] get_atom_site_block_n(int from,
                                        int to)
                                 throws DataAccessException

DataAccessException

atom_site_ext_list_size

public int atom_site_ext_list_size()
                            throws DataAccessException

DataAccessException

get_atom_site_ext_list

public AtomSiteExt[] get_atom_site_ext_list()
                                     throws DataAccessException

DataAccessException

get_atom_site_ext_block_n

public AtomSiteExt[] get_atom_site_ext_block_n(int from,
                                               int to)
                                        throws DataAccessException

DataAccessException

atom_site_anisotrop_list_size

public int atom_site_anisotrop_list_size()
                                  throws DataAccessException

DataAccessException

get_atom_site_anisotrop_list

public AtomSiteAnisotrop[] get_atom_site_anisotrop_list()
                                                 throws DataAccessException

DataAccessException

atom_type_list_size

public int atom_type_list_size()
                        throws DataAccessException

DataAccessException

get_atom_type_list

public AtomType[] get_atom_type_list()
                              throws DataAccessException

DataAccessException

chem_comp_list_size

public int chem_comp_list_size()
                        throws DataAccessException

DataAccessException

get_chem_comp_list

public ChemComp[] get_chem_comp_list()
                              throws DataAccessException

DataAccessException

chem_comp_angle_list_size

public int chem_comp_angle_list_size()
                              throws DataAccessException

DataAccessException

get_chem_comp_angle_list

public ChemCompAngle[] get_chem_comp_angle_list()
                                         throws DataAccessException

DataAccessException

chem_comp_atom_list_size

public int chem_comp_atom_list_size()
                             throws DataAccessException

DataAccessException

get_chem_comp_atom_list

public ChemCompAtom[] get_chem_comp_atom_list()
                                       throws DataAccessException

DataAccessException

chem_comp_bond_list_size

public int chem_comp_bond_list_size()
                             throws DataAccessException

DataAccessException

get_chem_comp_bond_list

public ChemCompBond[] get_chem_comp_bond_list()
                                       throws DataAccessException

DataAccessException

chem_comp_chir_list_size

public int chem_comp_chir_list_size()
                             throws DataAccessException

DataAccessException

get_chem_comp_chir_list

public ChemCompChir[] get_chem_comp_chir_list()
                                       throws DataAccessException

DataAccessException

chem_comp_chir_atom_list_size

public int chem_comp_chir_atom_list_size()
                                  throws DataAccessException

DataAccessException

get_chem_comp_chir_atom_list

public ChemCompChirAtom[] get_chem_comp_chir_atom_list()
                                                throws DataAccessException

DataAccessException

chem_comp_link_list_size

public int chem_comp_link_list_size()
                             throws DataAccessException

DataAccessException

get_chem_comp_link_list

public ChemCompLink[] get_chem_comp_link_list()
                                       throws DataAccessException

DataAccessException

chem_comp_plane_list_size

public int chem_comp_plane_list_size()
                              throws DataAccessException

DataAccessException

get_chem_comp_plane_list

public ChemCompPlane[] get_chem_comp_plane_list()
                                         throws DataAccessException

DataAccessException

chem_comp_plane_atom_list_size

public int chem_comp_plane_atom_list_size()
                                   throws DataAccessException

DataAccessException

get_chem_comp_plane_atom_list

public ChemCompPlaneAtom[] get_chem_comp_plane_atom_list()
                                                  throws DataAccessException

DataAccessException

chem_comp_tor_list_size

public int chem_comp_tor_list_size()
                            throws DataAccessException

DataAccessException

get_chem_comp_tor_list

public ChemCompTor[] get_chem_comp_tor_list()
                                     throws DataAccessException

DataAccessException

chem_comp_tor_value_list_size

public int chem_comp_tor_value_list_size()
                                  throws DataAccessException

DataAccessException

get_chem_comp_tor_value_list

public ChemCompTorValue[] get_chem_comp_tor_value_list()
                                                throws DataAccessException

DataAccessException

chem_link_list_size

public int chem_link_list_size()
                        throws DataAccessException

DataAccessException

get_chem_link_list

public ChemLink[] get_chem_link_list()
                              throws DataAccessException

DataAccessException

chem_link_angle_list_size

public int chem_link_angle_list_size()
                              throws DataAccessException

DataAccessException

get_chem_link_angle_list

public ChemLinkAngle[] get_chem_link_angle_list()
                                         throws DataAccessException

DataAccessException

chem_link_bond_list_size

public int chem_link_bond_list_size()
                             throws DataAccessException

DataAccessException

get_chem_link_bond_list

public ChemLinkBond[] get_chem_link_bond_list()
                                       throws DataAccessException

DataAccessException

chem_link_chir_list_size

public int chem_link_chir_list_size()
                             throws DataAccessException

DataAccessException

get_chem_link_chir_list

public ChemLinkChir[] get_chem_link_chir_list()
                                       throws DataAccessException

DataAccessException

chem_link_chir_atom_list_size

public int chem_link_chir_atom_list_size()
                                  throws DataAccessException

DataAccessException

get_chem_link_chir_atom_list

public ChemLinkChirAtom[] get_chem_link_chir_atom_list()
                                                throws DataAccessException

DataAccessException

chem_link_plane_list_size

public int chem_link_plane_list_size()
                              throws DataAccessException

DataAccessException

get_chem_link_plane_list

public ChemLinkPlane[] get_chem_link_plane_list()
                                         throws DataAccessException

DataAccessException

chem_link_plane_atom_list_size

public int chem_link_plane_atom_list_size()
                                   throws DataAccessException

DataAccessException

get_chem_link_plane_atom_list

public ChemLinkPlaneAtom[] get_chem_link_plane_atom_list()
                                                  throws DataAccessException

DataAccessException

chem_link_tor_list_size

public int chem_link_tor_list_size()
                            throws DataAccessException

DataAccessException

get_chem_link_tor_list

public ChemLinkTor[] get_chem_link_tor_list()
                                     throws DataAccessException

DataAccessException

chem_link_tor_value_list_size

public int chem_link_tor_value_list_size()
                                  throws DataAccessException

DataAccessException

get_chem_link_tor_value_list

public ChemLinkTorValue[] get_chem_link_tor_value_list()
                                                throws DataAccessException

DataAccessException

entity_list_size

public int entity_list_size()
                     throws DataAccessException

DataAccessException

get_entity_list

public Entity[] get_entity_list()
                         throws DataAccessException

DataAccessException

entity_keywords_list_size

public int entity_keywords_list_size()
                              throws DataAccessException

DataAccessException

get_entity_keywords_list

public EntityKeywords[] get_entity_keywords_list()
                                          throws DataAccessException

DataAccessException

entity_link_list_size

public int entity_link_list_size()
                          throws DataAccessException

DataAccessException

get_entity_link_list

public EntityLink[] get_entity_link_list()
                                  throws DataAccessException

DataAccessException

entity_name_com_list_size

public int entity_name_com_list_size()
                              throws DataAccessException

DataAccessException

get_entity_name_com_list

public EntityNameCom[] get_entity_name_com_list()
                                         throws DataAccessException

DataAccessException

entity_name_sys_list_size

public int entity_name_sys_list_size()
                              throws DataAccessException

DataAccessException

get_entity_name_sys_list

public EntityNameSys[] get_entity_name_sys_list()
                                         throws DataAccessException

DataAccessException

entity_poly_list_size

public int entity_poly_list_size()
                          throws DataAccessException

DataAccessException

get_entity_poly_list

public EntityPoly[] get_entity_poly_list()
                                  throws DataAccessException

DataAccessException

entity_poly_seq_list_size

public int entity_poly_seq_list_size()
                              throws DataAccessException

DataAccessException

get_entity_poly_seq_list

public EntityPolySeq[] get_entity_poly_seq_list()
                                         throws DataAccessException

DataAccessException

get_entity_poly_seq_block_n

public EntityPolySeq[] get_entity_poly_seq_block_n(int from,
                                                   int to)
                                            throws DataAccessException

DataAccessException

entity_src_gen_list_size

public int entity_src_gen_list_size()
                             throws DataAccessException

DataAccessException

get_entity_src_gen_list

public EntitySrcGen[] get_entity_src_gen_list()
                                       throws DataAccessException

DataAccessException

entity_src_nat_list_size

public int entity_src_nat_list_size()
                             throws DataAccessException

DataAccessException

get_entity_src_nat_list

public EntitySrcNat[] get_entity_src_nat_list()
                                       throws DataAccessException

DataAccessException

pdbx_entity_name_list_size

public int pdbx_entity_name_list_size()
                               throws DataAccessException

DataAccessException

get_pdbx_entity_name_list

public PdbxEntityName[] get_pdbx_entity_name_list()
                                           throws DataAccessException

DataAccessException

pdbx_prerelease_seq_list_size

public int pdbx_prerelease_seq_list_size()
                                  throws DataAccessException

DataAccessException

get_pdbx_prerelease_seq_list

public PdbxPrereleaseSeq[] get_pdbx_prerelease_seq_list()
                                                 throws DataAccessException

DataAccessException

pdbx_poly_seq_scheme_list_size

public int pdbx_poly_seq_scheme_list_size()
                                   throws DataAccessException

DataAccessException

get_pdbx_poly_seq_scheme_list

public PdbxPolySeqScheme[] get_pdbx_poly_seq_scheme_list()
                                                  throws DataAccessException

DataAccessException

pdbx_nonpoly_scheme_list_size

public int pdbx_nonpoly_scheme_list_size()
                                  throws DataAccessException

DataAccessException

get_pdbx_nonpoly_scheme_list

public PdbxNonpolyScheme[] get_pdbx_nonpoly_scheme_list()
                                                 throws DataAccessException

DataAccessException

pdbx_entity_assembly_list_size

public int pdbx_entity_assembly_list_size()
                                   throws DataAccessException

DataAccessException

get_pdbx_entity_assembly_list

public PdbxEntityAssembly[] get_pdbx_entity_assembly_list()
                                                   throws DataAccessException

DataAccessException

pdbx_entity_src_syn_list_size

public int pdbx_entity_src_syn_list_size()
                                  throws DataAccessException

DataAccessException

get_pdbx_entity_src_syn_list

public PdbxEntitySrcSyn[] get_pdbx_entity_src_syn_list()
                                                throws DataAccessException

DataAccessException

entry_link_list_size

public int entry_link_list_size()
                         throws DataAccessException

DataAccessException

get_entry_link_list

public EntryLink[] get_entry_link_list()
                                throws DataAccessException

DataAccessException

geom_list_size

public int geom_list_size()
                   throws DataAccessException

DataAccessException

get_geom_list

public Geom[] get_geom_list()
                     throws DataAccessException

DataAccessException

geom_angle_list_size

public int geom_angle_list_size()
                         throws DataAccessException

DataAccessException

get_geom_angle_list

public GeomAngle[] get_geom_angle_list()
                                throws DataAccessException

DataAccessException

geom_bond_list_size

public int geom_bond_list_size()
                        throws DataAccessException

DataAccessException

get_geom_bond_list

public GeomBond[] get_geom_bond_list()
                              throws DataAccessException

DataAccessException

geom_contact_list_size

public int geom_contact_list_size()
                           throws DataAccessException

DataAccessException

get_geom_contact_list

public GeomContact[] get_geom_contact_list()
                                    throws DataAccessException

DataAccessException

geom_hbond_list_size

public int geom_hbond_list_size()
                         throws DataAccessException

DataAccessException

get_geom_hbond_list

public GeomHbond[] get_geom_hbond_list()
                                throws DataAccessException

DataAccessException

geom_torsion_list_size

public int geom_torsion_list_size()
                           throws DataAccessException

DataAccessException

get_geom_torsion_list

public GeomTorsion[] get_geom_torsion_list()
                                    throws DataAccessException

DataAccessException

structure_list_size

public int structure_list_size()
                        throws DataAccessException

DataAccessException

get_structure_list

public Structure[] get_structure_list()
                               throws DataAccessException

DataAccessException

struct_asym_list_size

public int struct_asym_list_size()
                          throws DataAccessException

DataAccessException

get_struct_asym_list

public StructAsym[] get_struct_asym_list()
                                  throws DataAccessException

DataAccessException

struct_biol_list_size

public int struct_biol_list_size()
                          throws DataAccessException

DataAccessException

get_struct_biol_list

public StructBiol[] get_struct_biol_list()
                                  throws DataAccessException

DataAccessException

struct_biol_gen_list_size

public int struct_biol_gen_list_size()
                              throws DataAccessException

DataAccessException

get_struct_biol_gen_list

public StructBiolGen[] get_struct_biol_gen_list()
                                         throws DataAccessException

DataAccessException

struct_biol_keywords_list_size

public int struct_biol_keywords_list_size()
                                   throws DataAccessException

DataAccessException

get_struct_biol_keywords_list

public StructBiolKeywords[] get_struct_biol_keywords_list()
                                                   throws DataAccessException

DataAccessException

struct_biol_view_list_size

public int struct_biol_view_list_size()
                               throws DataAccessException

DataAccessException

get_struct_biol_view_list

public StructBiolView[] get_struct_biol_view_list()
                                           throws DataAccessException

DataAccessException

struct_conf_list_size

public int struct_conf_list_size()
                          throws DataAccessException

DataAccessException

get_struct_conf_list

public StructConf[] get_struct_conf_list()
                                  throws DataAccessException

DataAccessException

struct_conf_type_list_size

public int struct_conf_type_list_size()
                               throws DataAccessException

DataAccessException

get_struct_conf_type_list

public StructConfType[] get_struct_conf_type_list()
                                           throws DataAccessException

DataAccessException

struct_conn_list_size

public int struct_conn_list_size()
                          throws DataAccessException

DataAccessException

get_struct_conn_list

public StructConn[] get_struct_conn_list()
                                  throws DataAccessException

DataAccessException

struct_conn_type_list_size

public int struct_conn_type_list_size()
                               throws DataAccessException

DataAccessException

get_struct_conn_type_list

public StructConnType[] get_struct_conn_type_list()
                                           throws DataAccessException

DataAccessException

struct_keywords_list_size

public int struct_keywords_list_size()
                              throws DataAccessException

DataAccessException

get_struct_keywords_list

public StructKeywords[] get_struct_keywords_list()
                                          throws DataAccessException

DataAccessException

struct_mon_details_list_size

public int struct_mon_details_list_size()
                                 throws DataAccessException

DataAccessException

get_struct_mon_details_list

public StructMonDetails[] get_struct_mon_details_list()
                                               throws DataAccessException

DataAccessException

struct_mon_nucl_list_size

public int struct_mon_nucl_list_size()
                              throws DataAccessException

DataAccessException

get_struct_mon_nucl_list

public StructMonNucl[] get_struct_mon_nucl_list()
                                         throws DataAccessException

DataAccessException

struct_mon_prot_list_size

public int struct_mon_prot_list_size()
                              throws DataAccessException

DataAccessException

get_struct_mon_prot_list

public StructMonProt[] get_struct_mon_prot_list()
                                         throws DataAccessException

DataAccessException

struct_mon_prot_cis_list_size

public int struct_mon_prot_cis_list_size()
                                  throws DataAccessException

DataAccessException

get_struct_mon_prot_cis_list

public StructMonProtCis[] get_struct_mon_prot_cis_list()
                                                throws DataAccessException

DataAccessException

struct_ncs_dom_list_size

public int struct_ncs_dom_list_size()
                             throws DataAccessException

DataAccessException

get_struct_ncs_dom_list

public StructNcsDom[] get_struct_ncs_dom_list()
                                       throws DataAccessException

DataAccessException

struct_ncs_dom_lim_list_size

public int struct_ncs_dom_lim_list_size()
                                 throws DataAccessException

DataAccessException

get_struct_ncs_dom_lim_list

public StructNcsDomLim[] get_struct_ncs_dom_lim_list()
                                              throws DataAccessException

DataAccessException

struct_ncs_ens_list_size

public int struct_ncs_ens_list_size()
                             throws DataAccessException

DataAccessException

get_struct_ncs_ens_list

public StructNcsEns[] get_struct_ncs_ens_list()
                                       throws DataAccessException

DataAccessException

struct_ncs_ens_gen_list_size

public int struct_ncs_ens_gen_list_size()
                                 throws DataAccessException

DataAccessException

get_struct_ncs_ens_gen_list

public StructNcsEnsGen[] get_struct_ncs_ens_gen_list()
                                              throws DataAccessException

DataAccessException

struct_ncs_oper_list_size

public int struct_ncs_oper_list_size()
                              throws DataAccessException

DataAccessException

get_struct_ncs_oper_list

public StructNcsOper[] get_struct_ncs_oper_list()
                                         throws DataAccessException

DataAccessException

struct_ref_list_size

public int struct_ref_list_size()
                         throws DataAccessException

DataAccessException

get_struct_ref_list

public StructRef[] get_struct_ref_list()
                                throws DataAccessException

DataAccessException

struct_ref_seq_list_size

public int struct_ref_seq_list_size()
                             throws DataAccessException

DataAccessException

get_struct_ref_seq_list

public StructRefSeq[] get_struct_ref_seq_list()
                                       throws DataAccessException

DataAccessException

struct_ref_seq_dif_list_size

public int struct_ref_seq_dif_list_size()
                                 throws DataAccessException

DataAccessException

get_struct_ref_seq_dif_list

public StructRefSeqDif[] get_struct_ref_seq_dif_list()
                                              throws DataAccessException

DataAccessException

struct_sheet_list_size

public int struct_sheet_list_size()
                           throws DataAccessException

DataAccessException

get_struct_sheet_list

public StructSheet[] get_struct_sheet_list()
                                    throws DataAccessException

DataAccessException

struct_sheet_hbond_list_size

public int struct_sheet_hbond_list_size()
                                 throws DataAccessException

DataAccessException

get_struct_sheet_hbond_list

public StructSheetHbond[] get_struct_sheet_hbond_list()
                                               throws DataAccessException

DataAccessException

pdbx_struct_sheet_hbond_list_size

public int pdbx_struct_sheet_hbond_list_size()
                                      throws DataAccessException

DataAccessException

get_pdbx_struct_sheet_hbond_list

public PdbxStructSheetHbond[] get_pdbx_struct_sheet_hbond_list()
                                                        throws DataAccessException

DataAccessException

struct_sheet_order_list_size

public int struct_sheet_order_list_size()
                                 throws DataAccessException

DataAccessException

get_struct_sheet_order_list

public StructSheetOrder[] get_struct_sheet_order_list()
                                               throws DataAccessException

DataAccessException

struct_sheet_range_list_size

public int struct_sheet_range_list_size()
                                 throws DataAccessException

DataAccessException

get_struct_sheet_range_list

public StructSheetRange[] get_struct_sheet_range_list()
                                               throws DataAccessException

DataAccessException

struct_sheet_topology_list_size

public int struct_sheet_topology_list_size()
                                    throws DataAccessException

DataAccessException

get_struct_sheet_topology_list

public StructSheetTopology[] get_struct_sheet_topology_list()
                                                     throws DataAccessException

DataAccessException

struct_site_list_size

public int struct_site_list_size()
                          throws DataAccessException

DataAccessException

get_struct_site_list

public StructSite[] get_struct_site_list()
                                  throws DataAccessException

DataAccessException

struct_site_gen_list_size

public int struct_site_gen_list_size()
                              throws DataAccessException

DataAccessException

get_struct_site_gen_list

public StructSiteGen[] get_struct_site_gen_list()
                                         throws DataAccessException

DataAccessException

struct_site_keywords_list_size

public int struct_site_keywords_list_size()
                                   throws DataAccessException

DataAccessException

get_struct_site_keywords_list

public StructSiteKeywords[] get_struct_site_keywords_list()
                                                   throws DataAccessException

DataAccessException

struct_site_view_list_size

public int struct_site_view_list_size()
                               throws DataAccessException

DataAccessException

get_struct_site_view_list

public StructSiteView[] get_struct_site_view_list()
                                           throws DataAccessException

DataAccessException