org.rcsb.openmms.util
Class CatUtil

java.lang.Object
  |
  +--org.rcsb.openmms.util.CatUtil

Direct Known Subclasses:

AtomSiteAnisotropCatLoader, AtomSiteCatLoader, AtomSitesAltCatLoader, AtomSitesAltEnsCatLoader, AtomSitesAltGenCatLoader, AtomSitesCatLoader, AtomSitesFootnoteCatLoader, AtomTypeCatLoader, CellCatLoader, CellMeasurementCatLoader, CellMeasurementReflnCatLoader, ChemCompAngleCatLoader, ChemCompAtomCatLoader, ChemCompBondCatLoader, ChemCompCatLoader, ChemCompChirAtomCatLoader, ChemCompChirCatLoader, ChemCompLinkCatLoader, ChemCompPlaneAtomCatLoader, ChemCompPlaneCatLoader, ChemCompTorCatLoader, ChemCompTorValueCatLoader, ChemLinkAngleCatLoader, ChemLinkBondCatLoader, ChemLinkCatLoader, ChemLinkChirAtomCatLoader, ChemLinkChirCatLoader, ChemLinkPlaneAtomCatLoader, ChemLinkPlaneCatLoader, ChemLinkTorCatLoader, ChemLinkTorValueCatLoader, CitationAuthorCatLoader, CitationCatLoader, CitationEditorCatLoader, ComputingCatLoader, DatabaseCatLoader, DatabasePdbCaveatCatLoader, DatabasePdbMatrixCatLoader, DatabasePdbRemarkCatLoader, DatabasePdbRevCatLoader, DatabasePdbRevRecordCatLoader, DatabasePdbTvectCatLoader, DiffrnAttenuatorCatLoader, DiffrnCatLoader, DiffrnDetectorCatLoader, DiffrnMeasurementCatLoader, DiffrnOrientMatrixCatLoader, DiffrnOrientReflnCatLoader, DiffrnRadiationCatLoader, DiffrnRadiationWavelengthCatLoader, DiffrnReflnCatLoader, DiffrnReflnsCatLoader, DiffrnScaleGroupCatLoader, DiffrnSourceCatLoader, DiffrnStandardReflnCatLoader, DiffrnStandardsCatLoader, EntityCatLoader, EntityKeywordsCatLoader, EntityLinkCatLoader, EntityNameComCatLoader, EntityNameSysCatLoader, EntityPolyCatLoader, EntityPolySeqCatLoader, EntitySrcGenCatLoader, EntitySrcNatCatLoader, EntryLinkCatLoader, ExptlCatLoader, ExptlCrystalCatLoader, ExptlCrystalFaceCatLoader, ExptlCrystalGrowCatLoader, ExptlCrystalGrowCompCatLoader, GeomAngleCatLoader, GeomBondCatLoader, GeomCatLoader, GeomContactCatLoader, GeomHbondCatLoader, GeomTorsionCatLoader, PdbxDatabaseMessageCatLoader, PdbxDatabasePdbObsSprCatLoader, PdbxDatabaseProcCatLoader, PdbxDatabaseRelatedCatLoader, PdbxDatabaseRemarkCatLoader, PdbxDatabaseStatusCatLoader, PdbxEntityAssemblyCatLoader, PdbxEntityNameCatLoader, PdbxEntitySrcSynCatLoader, PdbxNmrConstraintsCatLoader, PdbxNmrDetailsCatLoader, PdbxNmrEnsembleCatLoader, PdbxNmrEnsembleRmsCatLoader, PdbxNmrExptlCatLoader, PdbxNmrExptlSampleCatLoader, PdbxNmrExptlSampleConditionsCatLoader, PdbxNmrForceConstantsCatLoader, PdbxNmrRefineCatLoader, PdbxNmrRepresentativeCatLoader, PdbxNmrSampleDetailsCatLoader, PdbxNmrSoftwareCatLoader, PdbxNmrSpectrometerCatLoader, PdbxNonpolySchemeCatLoader, PdbxPolySeqSchemeCatLoader, PdbxPrereleaseSeqCatLoader, PdbxRefineAuxFileCatLoader, PdbxRefineCatLoader, PdbxRefineTlsCatLoader, PdbxRefineTlsGroupCatLoader, PdbxStructSheetHbondCatLoader, PdbxXplorFileCatLoader, PhasingAveragingCatLoader, PhasingCatLoader, PhasingIsomorphousCatLoader, PhasingMadCatLoader, PhasingMadClustCatLoader, PhasingMadExptCatLoader, PhasingMadRatioCatLoader, PhasingMadSetCatLoader, PhasingMirCatLoader, PhasingMirDerCatLoader, PhasingMirDerReflnCatLoader, PhasingMirDerShellCatLoader, PhasingMirDerSiteCatLoader, PhasingMirShellCatLoader, PhasingSetCatLoader, PhasingSetReflnCatLoader, RefineAnalyzeCatLoader, RefineBIsoCatLoader, RefineCatLoader, RefineHistCatLoader, RefineLsRestrCatLoader, RefineLsRestrNcsCatLoader, RefineLsShellCatLoader, RefineOccupancyCatLoader, ReflnCatLoader, ReflnsCatLoader, ReflnsScaleCatLoader, ReflnsShellCatLoader, SoftwareCatLoader, StructAsymCatLoader, StructBiolCatLoader, StructBiolGenCatLoader, StructBiolKeywordsCatLoader, StructBiolViewCatLoader, StructCatLoader, StructConfCatLoader, StructConfTypeCatLoader, StructConnCatLoader, StructConnTypeCatLoader, StructKeywordsCatLoader, StructMonDetailsCatLoader, StructMonNuclCatLoader, StructMonProtCatLoader, StructMonProtCisCatLoader, StructNcsDomCatLoader, StructNcsDomLimCatLoader, StructNcsEnsCatLoader, StructNcsEnsGenCatLoader, StructNcsOperCatLoader, StructRefCatLoader, StructRefSeqCatLoader, StructRefSeqDifCatLoader, StructSheetCatLoader, StructSheetHbondCatLoader, StructSheetOrderCatLoader, StructSheetRangeCatLoader, StructSheetTopologyCatLoader, StructSiteCatLoader, StructSiteGenCatLoader, StructSiteKeywordsCatLoader, StructSiteViewCatLoader, SymmetryCatLoader, SymmetryEquivCatLoader

public abstract class CatUtil

extends java.lang.Object

Base class for mmCIF Category loaders

Version:

1.6

Author:

Douglas S. Greer

Constructor Summary

CatUtil()

Method Summary

float	cifFloat(java.lang.String v)
int	cifInt(java.lang.String v)
java.lang.String	cifString(java.lang.String v)
java.lang.String	clipString(java.lang.String v)
java.lang.Number	getNumber(java.lang.String v)
void	setChildIndex(java.lang.Object xe, java.util.ArrayList a, StringToIndex sti)
static void	setLenientParse(boolean lp)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CatUtil

public CatUtil()

Method Detail

setLenientParse

public static void setLenientParse(boolean lp)

cifFloat

public float cifFloat(java.lang.String v)

cifInt

public int cifInt(java.lang.String v)

clipString

public java.lang.String clipString(java.lang.String v)

getNumber

public java.lang.Number getNumber(java.lang.String v)
                           throws java.text.ParseException

java.text.ParseException

cifString

public java.lang.String cifString(java.lang.String v)

setChildIndex

public void setChildIndex(java.lang.Object xe,
                          java.util.ArrayList a,
                          StringToIndex sti)
                   throws CifParseException

CifParseException