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Re: cifdic.m96

Peter Keller (bsspak@bath.ac.uk)
Fri, 2 Feb 1996 10:34:36 +0000 (GMT)
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Previous message: herbert_bernstein: "cifdic.m96"
In reply to: Peter Keller: "Re: cifdic.m96"
Reply: Peter Keller: "Re: cifdic.m96"
On Wed, 31 Jan 1996, herbert_bernstein wrote:

> Minor problems:  Line 31639 is longer than 80 characters
[snip]

More seriously, lines which are exactly 80 characters long have been broken
at column 79, leading to all sorts of problems. For those of you with the
patch utility, here is a diff output for a quick fix. It also includes Herb's
errors, except for the "_computing.phasing_MIR" error, which is contained
within a text string, so does not affect dictionary parsing. Of necessity,
this patch contains lines which are longer than 80 characters, so don't use
it as-is if you have an old mailer which doesn't handle long lines. 

Regards,
Peter.


8200c8200
<                _chem_comp_bond.value_angle_esd.
---
>                _chem_link_bond.value_angle_esd.
8210c8210
<     _item_related.related_name  '_chem_link_bond.value_angle_dist'
---
>     _item_related.related_name  '_chem_link_bond.value_angle'
9091,9093c9091,9092
<     _item_examples.case          'From Norilsk (USSR)'
<                                  'Extracted from the bark of Cinchona Naturalis
< '
---
>     _item_examples.case         'From Norilsk (USSR)'
>                                 'Extracted from the bark of Cinchona Naturalis'
9961c9960
<     _item.name                  '_citation.journal_coden_PDB'
---
>     _item.name                  '_citation.journal_coden_CSD'
14757,14758c14756
<                                  'sequence is not heterogeneous at this monomer
< '
---
>                                  'sequence is not heterogeneous at this monomer'
14978,14979c14976,14977
<                '_entity_poly_seq_dif.db_code'  '_entity_reference.database_code
< '
---
>                '_entity_poly_seq_dif.db_code'  '_entity_reference.database_code'
> 
15000,15001c14998,14999
<                '_entity_poly_seq_dif.db_name'  '_entity_reference.database_name
< '
---
>                '_entity_poly_seq_dif.db_name'  '_entity_reference.database_name'
> 
15644,15645c15642
<                                   empirical    'empirical from diffraction data
< '
---
>                                   empirical    'empirical from diffraction data'
17688,17689c17685
<     _item_enumeration.detail      no   'do not include distance in special list
< '
---
>     _item_enumeration.detail      no   'do not include distance in special list'
21771,21772c21767
<     _item_examples.case          'Tex file created by FrameMaker on a Sun 3/280
< '
---
>     _item_examples.case          'Tex file created by FrameMaker on a Sun 3/280'
22719c22714
<     _item.name                  '_refine_ls_d_res_low'
---
>     _item.name                  '_refine.ls_d_res_low'
25856,25857c25851
<                '_struct_asym.id'                         struct_asym         ye
< s
---
>                '_struct_asym.id'                         struct_asym         yes
25870,25895c25864,25876
<                '_struct_biol_gen.asym_id'                struct_biol_gen     ye
< s
<                '_struct_conf.beg_label_asym_id'          struct_conf         ye
< s
<                '_struct_conf.end_label_asym_id'          struct_conf         ye
< s
<                '_struct_conn.ptnr1_label_asym_id'        struct_conn         ye
< s
<                '_struct_conn.ptnr2_label_asym_id'        struct_conn         ye
< s
<                '_struct_mon_nucl.label_asym_id'          struct_mon_nucl     ye
< s
<                '_struct_mon_prot.label_asym_id'          struct_mon_prot     ye
< s
<                '_struct_mon_prot_cis.label_asym_id'      struct_mon_prot_cis ye
< s
<                '_struct_ncs_dom_gen.beg_label_asym_id'   struct_ncs_dom_gen  ye
< s
<                '_struct_ncs_dom_gen.end_label_asym_id'   struct_ncs_dom_gen  ye
< s
<                '_struct_sheet_range.beg_label_asym_id'   struct_sheet_range  ye
< s
<                '_struct_sheet_range.end_label_asym_id'   struct_sheet_range  ye
< s
<                '_struct_site_gen.label_asym_id'          struct_site_gen     ye
< s
---
>                '_struct_biol_gen.asym_id'                struct_biol_gen     yes
>                '_struct_conf.beg_label_asym_id'          struct_conf         yes
>                '_struct_conf.end_label_asym_id'          struct_conf         yes
>                '_struct_conn.ptnr1_label_asym_id'        struct_conn         yes
>                '_struct_conn.ptnr2_label_asym_id'        struct_conn         yes
>                '_struct_mon_nucl.label_asym_id'          struct_mon_nucl     yes
>                '_struct_mon_prot.label_asym_id'          struct_mon_prot     yes
>                '_struct_mon_prot_cis.label_asym_id'      struct_mon_prot_cis yes
>                '_struct_ncs_dom_gen.beg_label_asym_id'   struct_ncs_dom_gen  yes
>                '_struct_ncs_dom_gen.end_label_asym_id'   struct_ncs_dom_gen  yes
>                '_struct_sheet_range.beg_label_asym_id'   struct_sheet_range  yes
>                '_struct_sheet_range.end_label_asym_id'   struct_sheet_range  yes
>                '_struct_site_gen.label_asym_id'          struct_site_gen     yes
25901,25946c25882,25904
<             '_geom_angle.atom_site_label_asym_id_1'   '_atom_site.label_asym_id
< '
<             '_geom_angle.atom_site_label_asym_id_2'   '_atom_site.label_asym_id
< '
<             '_geom_angle.atom_site_label_asym_id_3'   '_atom_site.label_asym_id
< '
<             '_geom_bond.atom_site_label_asym_id_1'    '_atom_site.label_asym_id
< '
<             '_geom_bond.atom_site_label_asym_id_2'    '_atom_site.label_asym_id
< '
<             '_geom_contact.atom_site_label_asym_id_1' '_atom_site.label_asym_id
< '
<             '_geom_contact.atom_site_label_asym_id_2' '_atom_site.label_asym_id
< '
<             '_geom_torsion.atom_site_label_asym_id_1' '_atom_site.label_asym_id
< '
<             '_geom_torsion.atom_site_label_asym_id_2' '_atom_site.label_asym_id
< '
<             '_geom_torsion.atom_site_label_asym_id_3' '_atom_site.label_asym_id
< '
<             '_geom_torsion.atom_site_label_asym_id_4' '_atom_site.label_asym_id
< '
<             '_struct_conf.beg_label_asym_id'          '_atom_site.label_asym_id
< '
<             '_struct_conf.end_label_asym_id'          '_atom_site.label_asym_id
< '
<             '_struct_conn.ptnr1_label_asym_id'        '_atom_site.label_asym_id
< '
<             '_struct_conn.ptnr2_label_asym_id'        '_atom_site.label_asym_id
< '
<             '_struct_mon_nucl.label_asym_id'          '_atom_site.label_asym_id
< '
<             '_struct_mon_prot.label_asym_id'          '_atom_site.label_asym_id
< '
<             '_struct_mon_prot_cis.label_asym_id'      '_atom_site.label_asym_id
< '
<             '_struct_ncs_dom_gen.beg_label_asym_id'   '_atom_site.label_asym_id
< '
<             '_struct_ncs_dom_gen.end_label_asym_id'   '_atom_site.label_asym_id
< '
<             '_struct_sheet_range.beg_label_asym_id'   '_atom_site.label_asym_id
< '
<             '_struct_sheet_range.end_label_asym_id'   '_atom_site.label_asym_id
< '
<             '_struct_site_gen.label_asym_id'          '_atom_site.label_asym_id
< '
---
>             '_geom_angle.atom_site_label_asym_id_1'   '_atom_site.label_asym_id'
>             '_geom_angle.atom_site_label_asym_id_2'   '_atom_site.label_asym_id'
>             '_geom_angle.atom_site_label_asym_id_3'   '_atom_site.label_asym_id'
>             '_geom_bond.atom_site_label_asym_id_1'    '_atom_site.label_asym_id'
>             '_geom_bond.atom_site_label_asym_id_2'    '_atom_site.label_asym_id'
>             '_geom_contact.atom_site_label_asym_id_1' '_atom_site.label_asym_id'
>             '_geom_contact.atom_site_label_asym_id_2' '_atom_site.label_asym_id'
>             '_geom_torsion.atom_site_label_asym_id_1' '_atom_site.label_asym_id'
>             '_geom_torsion.atom_site_label_asym_id_2' '_atom_site.label_asym_id'
>             '_geom_torsion.atom_site_label_asym_id_3' '_atom_site.label_asym_id'
>             '_geom_torsion.atom_site_label_asym_id_4' '_atom_site.label_asym_id'
>             '_struct_conf.beg_label_asym_id'          '_atom_site.label_asym_id'
>             '_struct_conf.end_label_asym_id'          '_atom_site.label_asym_id'
>             '_struct_conn.ptnr1_label_asym_id'        '_atom_site.label_asym_id'
>             '_struct_conn.ptnr2_label_asym_id'        '_atom_site.label_asym_id'
>             '_struct_mon_nucl.label_asym_id'          '_atom_site.label_asym_id'
>             '_struct_mon_prot.label_asym_id'          '_atom_site.label_asym_id'
>             '_struct_mon_prot_cis.label_asym_id'      '_atom_site.label_asym_id'
>             '_struct_ncs_dom_gen.beg_label_asym_id'   '_atom_site.label_asym_id'
>             '_struct_ncs_dom_gen.end_label_asym_id'   '_atom_site.label_asym_id'
>             '_struct_sheet_range.beg_label_asym_id'   '_atom_site.label_asym_id'
>             '_struct_sheet_range.end_label_asym_id'   '_atom_site.label_asym_id'
>             '_struct_site_gen.label_asym_id'          '_atom_site.label_asym_id'
27763c27721
<     _item.name                  '_struct_mon_nucl.taum'
---
>     _item.name                  '_struct_mon_nucl.P'
30679,30680c30637
<                '-?(([0-9]+)|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?
< '
---
>                '-?(([0-9]+)|([0-9]*[.][0-9]+))([(][0-9]+[)])?([eE][+-]?[0-9]+)?'
32033,32034c31990
< #-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-e
< f
---
> #-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-eof-ef
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Previous message: herbert_bernstein: "cifdic.m96"
In reply to: Peter Keller: "Re: cifdic.m96"
Reply: Peter Keller: "Re: cifdic.m96"