org.rcsb.openmms.meta
Class MatrixTrans

java.lang.Object
  |
  +--org.rcsb.openmms.meta.Trans
        |
        +--org.rcsb.openmms.meta.FieldTrans
              |
              +--org.rcsb.openmms.meta.MatrixTrans

public class MatrixTrans

extends FieldTrans

Class for Matrices in Cif metamodel

Version:

1.3

Author:

Douglas S. Greer

Field Summary

Fields inherited from class org.rcsb.openmms.meta.FieldTrans

columnIndexName, columnName, copyName, descriptionParagraphs, fieldType, fullFieldName, fullRefName, IS_A_STREAM_DATATYPE, isCifField, pseudoField, realName, structType

Constructor Summary

MatrixTrans(java.lang.String n)

MatrixTrans(java.lang.String varname, java.lang.String cifname, java.lang.String suf)

MatrixTrans(java.lang.String varname, java.lang.String cifname, java.lang.String suf, boolean sym)

Method Summary

void	accept(TransVisitor v)
protected java.lang.String	computeFullName(char c) Overridded by SubfieldTrans and MatrixTrans For Fields and Subfields this will return the name of a basic type only if getFieldStructure() returns null.
java.lang.String	getCifItemName() This method must return a valid mmCIF dictionary reference
java.lang.String	getName()
java.lang.String	getTagName()

Methods inherited from class org.rcsb.openmms.meta.FieldTrans

cifNameToTagName, computeNames, getCifParentIndex, getColumnIndexName, getColumnName, getContainingField, getCopyName, getDictionaryItem, getFieldStructure, getFieldType, getFieldType, getFlagName, getFullFieldName, getFullRefName, getRealName, getStructure, isCifField, isFieldBitSet, isIndexField, isLeaf, isPseudoField, setCifParentIndex, setColumnIndexName, setColumnName, setCopyName, setDictionaryItem, setFieldBit, setFieldStructure, setPseudoField, setRealName, setStructure

Methods inherited from class org.rcsb.openmms.meta.Trans

add, convertToFlagName, convertToUnderbar, getBlankLines, getChild, getComment, getTransType, numberOfChildren, replace, setBlankLines, setComment, setTransType

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MatrixTrans

public MatrixTrans(java.lang.String n)

MatrixTrans

public MatrixTrans(java.lang.String varname,
                   java.lang.String cifname,
                   java.lang.String suf)

MatrixTrans

public MatrixTrans(java.lang.String varname,
                   java.lang.String cifname,
                   java.lang.String suf,
                   boolean sym)

Method Detail

getName

public java.lang.String getName()

Overrides:

getName in class Trans

computeFullName

protected java.lang.String computeFullName(char c)

Description copied from class: FieldTrans

Overridded by SubfieldTrans and MatrixTrans For Fields and Subfields this will return the name of a basic type only if getFieldStructure() returns null. Otherwise it has type getFieldStructure().getName() Note that private methods are not overriden, so this method must declared with at least protected access.

Overrides:

computeFullName in class FieldTrans

getCifItemName

public java.lang.String getCifItemName()

Description copied from class: FieldTrans

This method must return a valid mmCIF dictionary reference

Overrides:

getCifItemName in class FieldTrans

getTagName

public java.lang.String getTagName()

Overrides:

getTagName in class FieldTrans

accept

public void accept(TransVisitor v)
            throws java.io.IOException,
                   TransGenException

Overrides:

accept in class FieldTrans

java.io.IOException

TransGenException