invar | structure invariant options |
start | selection of starting phases options |
phase | defining starting phase |
print options of different stages | |
symbad | symbolic addition procedure options |
setfom | define figure of merit parameters |
psets | specify phase sets to be output |
SIMPEL | 1 | number of generators eligible for starting set | 25% of total |
2 | number of generators eligible for divergence | 50% of total | |
3 | number of generators eligible for phasing | 100% of total | |
4 | minimum |E| value of input generators | from bdf .inv | |
5 | data set number of |E|'s | 1 | |
6 | number of phase sets output on output archive bdf | 4 |
start | 1 | control invariants used in con/divergence process | |||
use triplets only in starting process | trip | ||||
use quartets only in starting process | quar | ||||
use triplets and quartets in starting process | all | ||||
2 | probability term used in convergence process | ||||
use (1) described in Step 1 | 1 | ||||
use (2) described in Step 1 | 2 | ||||
3 | threshold ALTHR to accept one invariant | 10th-largest ![]() | |||
4 | factor used to reduce [alpha] using ![]() | 1 | |||
5 | number of symbols to be assigned in convergence process | if no phase lines entered | 4 | ||
otherwise | 0 |
invar | 1 | invariant types to be used in symbolic addition | |||
use triplets only | trip | ||||
use quartets only | quar | ||||
use triplets and quartets | all | ||||
2 | minimum A of triplets used | from bdf inv | |||
3 | minimum B of quartets used | from bdf inv | |||
4 | maximum triplets allowed per generator | 100 | |||
5 | maximum quartets allowed per generator | 100 | |||
6 | low crossvector sum limit for quartets | 25% of max XV-sum (up to max of 2.5) | |||
7 | high cross vector sum limit for quartets | 75% of max XV-sum (to min of 4.0) | |||
8 | ![]() | if no fragment ![]() | 180 | ||
otherwise | 0 |
print [a] | 1- | print invariant statistics and sums | invar | ||
print converge order of generators | converg | ||||
print extension of starting set into converge set | extend | ||||
print extension of starting set into diverge set | diverg | ||||
print symbolic addition extension process | symbad | ||||
print application of accepted symbols to all |E|'s | correl | ||||
print figure-of-merit details | fomtest | ||||
print phase sets output to bdf | bdfout | ||||
Notes: a. Entering no options implies that all print options are invoked. |
symbad | 1 | probability factor used in symbolic addition | |||
use sum of weighted ![]() | wa | ||||
use sum of ![]() | an | ||||
2 | acceptance procedure if multiple symbols generated | ||||
accept most probable indication | mult | ||||
reject all but single symbol indication | sing | ||||
3 | no. of generators added in blocks to the symbolic process | 100 | |||
4 | acceptance threshold of weight for wa option | 0.3 |
setfom | 1 | number of top phase sets applied in FOM tests [a] | 16 |
2 | optimum value for QFOM | 0.75 | |
3 | weight of QFOM in CFOM and AMOS | 1 | |
4 | optimum value of RFOM | 1 | |
5 | weight of RFOM in CFOM and AMOS | 1 | |
6 | optimum value of RFAC FOM | 0.25 | |
7 | weight of RFAC in CFOM and AMOS | 1 | |
8 | optimum value of PSI0 FOM | 0.75 | |
9 | weight of PSI0 in CFOM and AMOS | 1 | |
10 | optimum value of NEGQ FOM | 60 | |
11 | weight of NEGQ in CFOM and AMOS | 1 | |
Notes: a. Phase sets are presorted based on the max correlation with the symbolic phases. |
phase | 1-3 | hkl indices | |||
4 | input phase (in degrees) | assign as new symbolic phase | |||
5 | Phase status option | Code | |||
assign as origin defining phase | odr | ||||
assign as enantiomorph phase | edr | ||||
assign as symbolic phase [a] | sym | ||||
assign as numeric phase1 | set | ||||
remove phase from phasing process | nul | ||||
Notes: a. The default is sym if field 4 is void; set is default if field 4 is numeric. |