| radii | set radius for atom types |
| assume | assume atom types correct |
| search | limit search to symmetry type |
| complx | define moleculat cluster |
| remove | define atom label or atom type not to beincluded in search |
| align | atom labels to be forced to be on the symmetryelement |
| BUNYIP | Option | Code | Arg | Def | |
| coordinates used in search | clust | cluster coordinates | |||
| input | use input coordinates | ||||
| print the midpoint table | midpt | ||||
| set search tolerance | tolc | f | 0.5A | ||
| allow n sites outside tolerance | allow | n | 0 | ||
| co-linearity/centricity threshold | close | t | 0.25A | ||
| quick search | fast | n | n atom matches | 10 |