Uses of Package
org.rcsb.openmms.cifparse

Packages that use org.rcsb.openmms.cifparse

org.rcsb.openmms.apps.rdb	Provides classes that implement PDBase, an application which loads macromolecular structure data files into a relational database.
org.rcsb.openmms.apps.stats	Provides classes to collect statistics on mmCIF data files using the low-level cifparse package.
org.rcsb.openmms.apps.xconv
org.rcsb.openmms.apps.xmc	Provides classes to convert macromolecular structure data files stored in mmCIF format into an XML style format (XMC).
org.rcsb.openmms.cifparse	Provides classes to parse mmCIF files.
org.rcsb.openmms.entry	A collection of classes that provide concrete implementations of Entry objects in the Corba modules and submodules and manage the Entry level MMS cache.
org.rcsb.openmms.loader	Provides classes to load macromolecular structure data files stored in mmCIF format into the MMS Entry data structure.
org.rcsb.openmms.meta	Provides classes and interfaces that create and manipulate a macromolecular structure metamodel based on the mmCIF dictionary.
org.rcsb.openmms.util	Provides utility classes required by the MMS metamodel, category loaders and various data format expressions.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.apps.rdb

CifParseException
Denotes an error condition encountered when reading a cif file.

DataItemList
Stores and manages the list of Data Items defined in a cif dictionary.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.apps.stats

Builder
The "Builder" interface used by the mmCIF parser.

CifParseException
Denotes an error condition encountered when reading a cif file.

CifParser
Central core of the mmCIF parser.

CifTokenizer
Class that reads the cif/STAR formatted file and breaks it up into tokens at "word" boundaries.

DataItem
Stores the information about a single cif Data Item defined in a dictionary.

DataItemList
Stores and manages the list of Data Items defined in a cif dictionary.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.apps.xconv

Builder
The "Builder" interface used by the mmCIF parser.

CifDictionary
Structure to hold information read from a cif dictionary

CifParseException
Denotes an error condition encountered when reading a cif file.

DataItem
Stores the information about a single cif Data Item defined in a dictionary.

DictionaryCategory
Stores and manages information about a single cif category type.

DictionaryItem
Stores and manages information about a single cif Item type.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.apps.xmc

Builder
The "Builder" interface used by the mmCIF parser.

CifDictionary
Structure to hold information read from a cif dictionary

CifParseException
Denotes an error condition encountered when reading a cif file.

DataItem
Stores the information about a single cif Data Item defined in a dictionary.

DictionaryCategory
Stores and manages information about a single cif category type.

DictionaryItem
Stores and manages information about a single cif Item type.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.cifparse

Builder
The "Builder" interface used by the mmCIF parser.

CatLoader
Base interface for all category loaders.

CifDictionary
Structure to hold information read from a cif dictionary

CifParseException
Denotes an error condition encountered when reading a cif file.

CifTokenizer
Class that reads the cif/STAR formatted file and breaks it up into tokens at "word" boundaries.

DataItem
Stores the information about a single cif Data Item defined in a dictionary.

DataItemList
Stores and manages the list of Data Items defined in a cif dictionary.

DictionaryCategory
Stores and manages information about a single cif category type.

DictionaryCategoryList
Stores the list of categories found when parsing a cif dictionary.

DictionaryItem
Stores and manages information about a single cif Item type.

DictionaryItemList
Stores the list of items found when parsing a cif dictionary.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.entry

Builder
The "Builder" interface used by the mmCIF parser.

CifParseException
Denotes an error condition encountered when reading a cif file.

DataItem
Stores the information about a single cif Data Item defined in a dictionary.

DataItemList
Stores and manages the list of Data Items defined in a cif dictionary.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.loader

CatLoader
Base interface for all category loaders.

CifParseException
Denotes an error condition encountered when reading a cif file.

LoaderLink
This class is used to bind the Cif Category/Item to the Loader class which handles data for that item

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.meta

CifDictionary
Structure to hold information read from a cif dictionary

CifParseException
Denotes an error condition encountered when reading a cif file.

DictionaryCategory
Stores and manages information about a single cif category type.

DictionaryItem
Stores and manages information about a single cif Item type.

Classes in org.rcsb.openmms.cifparse used by org.rcsb.openmms.util

CifParseException
Denotes an error condition encountered when reading a cif file.