Software Directory
Displaying 401 - 420 of 976JANA
program focused on solution, refinement and interpretation of difficult, especially modulated structures
Maintenance Status: Active
Jana2000
Crystallographic computing system for standard, modulated and composite structures.
Application Area: Structure determination, Quantum crystallography
Asset ID: 47418
Bibliographic Reference: Dusek, M., Petricek, V., Wunschel, M., Dinnebier, R. E. & van Smaalen, S. (2001). J. Appl. Cryst. 34, 398-404.
Jana2020
Jana2020 is a crystallographic computing system for standard, modulated and composite structures. It can handle x-ray, neutron and electron diffraction data from both powders and single crystals. It allows the refinement of magnetic structures using the magnetic (super)space group formalism. Data from electron diffraction can be refined using kinematical and dynamical approach.
Application Area: Characterization, Chemistry, Crystal chemistry, Diffraction, Inorganic chemistry, Materials science, Minerals, Modelling, Phase transitions, Structure, Structure determination, Symmetry, Quantum crystallography
Asset ID: 158894
Bibliographic Reference: Petricek, V., Palatinus, L., Plasil, J. and Dusek, M. (2024), Z. Krist. 238, 271-282
DOI: https://doi.org/10.1515/zkri-2023-0005
Submitter: Lukas Palatinus
Jap3D
Rendering electron density data into three-dimensional isosurfaces. Electron density data have to be provided in a simple ASCII format or in binary format.
Asset ID: 47422
Bibliographic Reference: Weber, S. (1999). J. Appl. Cryst. 32, 1028.
Jas
Image contrast enhancement using extended adaptive histogram equalisation. INTEREST AREAS: * General image processing algorithms * Biomedical image processing, image display, radiography * Photography, image manipulation, and recreation
Java Lattice Tool
Interactive macromolecular graphics
Java Stereograms
Java Stereograms plots stereographic projections of poles onto a Wulff net. The pole distribution is determined by the given unit cell parameters. It is possible to give restraints to the number of generated poles by editing the values for the "maximum order" (maximum value of an index hkl) and the range of interplanar spacings "d" (dmin-dmax). For indexing the poles in the stereographic hemisphere simply click at them. The angles Rho and Phi corespond to rotations of the whole set on the Wulff net (always from zero position).
Jcrystal
a computer program for creating, editing, displaying and deploying crystal shapes.
Asset ID: 47443
JECP/ED
Simulation of selected-area and precession electron diffraction patterns
Application Area: Electron microscopy
Asset ID: 47402
Bibliographic Reference: Li, X. Z. (2003). J. Appl. Cryst. 36, 956.
Jitax77
Conversion of CCD frame data from TIFF format to Photonic Science FLF format.
Asset ID: 47447
Jmol
Jmol is a free, open source molecule viewer for students, educators, and researchers in chemistry and biochemistry. It is cross-platform, running on Windows, Mac OS X, and Linux/Unix systems.
The JmolApplet is a web browser applet that can be integrated into web pages.
The Jmol application is a standalone Java application that runs on the desktop.
The JmolViewer is a development tool kit that can be integrated into other Java applications.Application Area: Biology, Chemistry, Graphics, Materials science, Teaching, Visualization
Maintenance Status: Active
Asset ID: 114905
Bibliographic Reference: Hanson, R.M. (2010). J. Appl. Cryst. 43, 1250–1260.
JoinMap
Software package for the construction of genetic
Asset ID: 47439
JsCifBrowser
A JavaScript codebase for viewing and applying dictionary Relational Expression Language (dREL) methods to Crystallographic Information Files (CIFs). N.B. This is not fully compatible with the current DDLm specifications, but may be a useful starting point for understanding dREL
JSV
Version 1.07. Structure Viewer. Accepts input data for asymmetric unit cell, full unit cell or cartesian coordinates for all spacegroup symmetries. Measuring distances and angles, periodic table for radius and atom color settings. Output PostSript, VRML, GIF JPG. Includes also X-ray intensity calculations and a special reciprocal space viewer for viewing 3D/2D diffraction patterns. Real time rotations are possible for 3D mode, precession mode and Laue mode. Furthermore it includes an improved version of STEREOGRAM software. The Wulff net may be zoomed and dragged. Besides poles (hkl) it can plot zone axes [uvw] and produce PostScript output. Needs the java interpreter JDK1.2 (http://www.javasoft.com) to run it.
Application Area: Diffraction
Asset ID: 47414
Bibliographic Reference: Weber, S. (1999). J. Appl. Cryst. 32, 1027-1028
K_Space Navigator
K_Space Navigator
KCL
For KCl structures program to refine parameters in the harmonic approximation. refines individual thermal, scale, extinction parameters in KCl type structures.
KCrystal
Linux `live-CD' (a Linux system running from a bootable CD) that contains a collection of the main software (free distribution) used in the Rietveld method.
Application Area: Minerals, Powder
Asset ID: 47473
Bibliographic Reference: Utuni, V. H. S., Andrade, A. V. C., Correa, H. P. S. & Paiva-Santos, O. (2005). J. Appl. Cryst. 38, 706-707.
Khoros
Image processing and visualization system. Build your own application using a flexible User Configuration Preferences, streaming Data Services and Operators, visual Workspace Compilers, installation, Packaging, and Build System. User Friendly Code Generation Paradigm. Online Manuals and Automated Migration.
Asset ID: 47504
Kintecus
To model the reactions of chemical, biological, nuclear and atmospheric processes using two input spreadsheet files: a reaction spreadsheet and a species description spreadsheet. Has been designed with ease of use in mind. In the new version ability to run Chemkin/Senkin models without programming or compiling. Support for Excel and Lotus spreadsheet programs. Other chemistry programs available.
Koalariet
Rietveld program.Modeling of peaks using the approach described by Coehlo and Cheary.