Re: CIF-JSON draft 2017-05-15
- Subject: Re: CIF-JSON draft 2017-05-15
- From: Andrius Merkys <andrius.merkys@xxxxxxxxx>
- Date: Thu, 18 May 2017 09:28:30 +0300
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Dear Bob, we at the COD tend to make as little assumptions about input CIFs
as possible, thus concatenated CCDC CIFs are retained correctly in
COD-JSON. In addition to that, COD-JSON is also able to preserve: 1) data block order (I can imagine an animation of molecular motion where each frame is stored in a separate CIF data block), 2) CIF loops having data items from different categories (AFAIK, a discouraged practice, but still used, for example, see _ccdc_geom_bond_type tag in http://www.crystallography.net/cod/4507300.cif), 3) loops with lists as values, all possible combinations. Of course, our method has some 2x-3x overhead, but JSON here is used as a "carrier" which is supposed to contain almost everything from the original CIFs (hence the "high-fidelity"). Best, On 17/05/17 22:33, Robert Hanson wrote:
CAF_YUvU1RKe9bGWr4HKkVaSzxZ+aNyiO9wxMZ6zz4zbOGKuuXg@mail.gmail.com" type="cite"> -- Andrius Merkys PhD student at Vilnius University Institute of Biotechnology, Saulėtekio al. 7, room V325 LT-10257 Vilnius, Lithuania Lecturer at Vilnius University Faculty of Mathematics and Informatics, Naugarduko g. 24 LT-03225 Vilnius, Lithuania |
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- References:
- CIF-JSON draft 2017-05-15 (James Hester)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (James Hester)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (Marcin Wojdyr)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (Marcin Wojdyr)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
- Re: CIF-JSON draft 2017-05-15 (Marcin Wojdyr)
- Re: CIF-JSON draft 2017-05-15 (Robert Hanson)
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