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Re: [Imgcif-l] Issue with image array directions
- To: <imgcif-l@iucr.org>
- Subject: Re: [Imgcif-l] Issue with image array directions
- From: <Graeme.Winter@Diamond.ac.uk>
- Date: Wed, 8 Jun 2011 15:17:26 +0000
- Accept-Language: en-GB, en-US
- Cc: arvai@scripps.edu
- In-Reply-To: <83ED9ECC140E6149AF185746355CF4AB25843FE8@ADSCDC2.adsc.local>
- References: <13999B6FC038EB44B067771E3CFBD091076141@EXCHMBX03.fed.cclrc.ac.uk>,<13999B6FC038EB44B067771E3CFBD09107615D@EXCHMBX03.fed.cclrc.ac.uk><83ED9ECC140E6149AF185746355CF4AB25843FE8@ADSCDC2.adsc.local>
Dear Chris, Version: ADXV 1.9.8b, which I gather is reasonably recent. A good suggestion: I will make both permutations of images available shortly. One comment I would make though is earlier images from e.g. the ADSC were square so it would be impossible to spot when the parameters were back to front. I am also not sure who's wrong, adxv or Mosflm, which is why I ask here. http://www.ccp4.ac.uk/xia/adxv-happy-mos-not.cbf http://www.ccp4.ac.uk/xia/mos-happy-adxv-not.cbf These are a pair of frames with the only (real) difference being the ARRAY1 size parameters - ADXV gets one right, mosflm the other. Best wishes, Graeme -----Original Message----- From: imgcif-l-bounces@iucr.org [mailto:imgcif-l-bounces@iucr.org] On Behalf Of Chris Nielsen Sent: 08 June 2011 16:08 To: The Crystallographic Binary File and its imgCIF application to image data Cc: arvai@scripps.edu Subject: Re: [Imgcif-l] Issue with image array directions Hi Graeme, Images displayed correctly with adxv in the past (images from, say, SSRL 12-2). Are you using the latest adxv? I'd also suggest giving Andy Arvai a web url to download the images in question and test them himself. Best, Chris ________________________________________ From: imgcif-l-bounces@iucr.org [imgcif-l-bounces@iucr.org] on behalf of Graeme.Winter@Diamond.ac.uk [Graeme.Winter@Diamond.ac.uk] Sent: Wednesday, June 08, 2011 7:56 AM To: imgcif-l@iucr.org Subject: Re: [Imgcif-l] Issue with image array directions Aha, no attachments: http://www.ccp4.ac.uk/xia/A-adxv.png http://www.ccp4.ac.uk/xia/A-mosflm.png (images are deliberately blank: we are in shutdown) Best wishes, Graeme -----Original Message----- From: imgcif-l-bounces@iucr.org [mailto:imgcif-l-bounces@iucr.org] On Behalf Of Graeme.Winter@diamond.ac.uk Sent: 08 June 2011 15:55 To: imgcif-l@iucr.org Subject: [Imgcif-l] Issue with image array directions Hi Folks, This morning while working on full-cbfifying Pilatus images I found an interesting (or at least noteworthy) feature: mosflm and adxv disagree about the correct definitions for the fast / slow image sizes. If I load an image with header containing this: loop_ _array_structure_list.array_id _array_structure_list.index _array_structure_list.dimension _array_structure_list.precedence _array_structure_list.direction _array_structure_list.axis_set_id ARRAY1 1 2527 1 increasing ELEMENT_X ARRAY1 2 2463 2 increasing ELEMENT_Y I get the images attached - mosflm has it about right and adxv has it mangled. Switching these (which I think is correct: at least it corresponds to the subsequent MIME header) as follows adxv is happy but mosflm makes a mess. loop_ _array_structure_list.array_id _array_structure_list.index _array_structure_list.dimension _array_structure_list.precedence _array_structure_list.direction _array_structure_list.axis_set_id ARRAY1 1 2463 1 increasing ELEMENT_X ARRAY1 2 2527 2 increasing ELEMENT_Y The thing is that (as I understand it) both are using cbflib so what's happening? I guess an issue is that the only "real" cbf images to date have been square. Any suggestions? Thanks in advance & best wishes, Graeme Dr. Graeme Winter Senior Software Scientist Diamond Light Source +44 1235 778091 (work) +44 7786 662784 (work mobile) -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom _______________________________________________ imgcif-l mailing list imgcif-l@iucr.org http://scripts.iucr.org/mailman/listinfo/imgcif-l _______________________________________________ imgcif-l mailing list imgcif-l@iucr.org http://scripts.iucr.org/mailman/listinfo/imgcif-l -- This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail. Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message. Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom _______________________________________________ imgcif-l mailing list imgcif-l@iucr.org http://scripts.iucr.org/mailman/listinfo/imgcif-l
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- [Imgcif-l] Issue with image array directions (Graeme.Winter)
- Re: [Imgcif-l] Issue with image array directions (Graeme.Winter)
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