Re: [dddwg] To contribute to Open Science using Zenodo I foundquite straightforward

All,

There is one problem with hdf5 format. hdf5 requires master file that should contain description of experiment. For example most of the eiger data are produced without header. The master file format is arbitrary at the moment.

Wladek

On 9/27/2016 10:42 AM, Andrew Goetz wrote:

Simon,

why not pack the files into and hdf5 container ? That is what we are planning to do for archiving files.

Andy

On 27.09.2016 16:27, Coles S.J. wrote:

John,

This is very good to hear!

I personally have an example where I wish to make the images available
for a data collection associated with a remarkable structure we are
going to submit to an IUCr journal quite soon. The primary reason I
want to make the raw data available is so that others can take them
and ‘have a go themselves’ to see if they can come up with a different
/ better model.

All fine – but I note you uploaded individual images? Or did Zenodo
unpack a zipfile? I don’t want to go through the effort of uploading
300 individual files – and I’m absolutely sure nobody wants to go
through the effort of downloading 300 individual files to reprocess
and reuse the dataset! Is there a reason for this - why not bundle
them together in a package of some sort (Zip too big)? Or am I missing
something?

Thanks!
Simon.

Simon Coles FRSC, SFHEA.
Professor of Structural Chemistry.
Director, UK National Crystallography Service.
Chemistry, Faculty of Natural and Environmental Sciences,
University of Southampton.
Southampton, SO17 1BJ. UK.
+44(0)2380596721
Staff Page: http://www.soton.ac.uk/chemistry/about/staff/sjc5.page
NCS: http://www.ncs.ac.uk | Southampton Diffraction Centre:
http://www.soton.ac.uk/sdc
ResearcherID: http://www.researcherid.com/rid/A-1795-2009 | ORCID:
http://orcid.org/0000-0001-8414-9272


From: dddwg <dddwg-bounces@iucr.org> on behalf of
"john.helliwell@manchester.ac.uk" <john.helliwell@manchester.ac.uk>
Date: Tuesday, 27 September 2016 at 14:48
To: "dddwg@iucr.org" <dddwg@iucr.org>
Subject: [dddwg] To contribute to Open Science using Zenodo I found
quite straightforward

Dear Colleagues,
I imagine that it will be of general interest that to contribute to
"OpenScience" harnessing Zenodo is quite straightforward ie:- preprint
and raw data uploaded and assigned dois on Sept 24th 2016 and then for
good measure announced on my twitter account @HelliwellJohn on Sept
25th 2016:-

#OpenScience Our atomic resolution cisplatin lysozyme study; the dois
are here:- http://doi.org/10.5281/zenodo.155068
http://doi.org/10.5281/zenodo.154704

The PDB code (5LXW) is cited in the preprint at the first Zenodo doi
above. My instruction to PDB to release the entry 5LXW I made on Sept
25th 2016.

Greetings,
John

Emeritus Prof of Chemistry John R Helliwell DSc_Physics
Perspectives in
Crystallography<https://outlook.manchester.ac.uk/owa/redir.aspx?SURL=JLjRW0_uSO2uCWXoeK-_YEiBuCJ_wkHJ5QxVDbIIAj0l57JRLfrSCGgAdAB0AHAAcwA6AC8ALwB3AHcAdwAuAGMAcgBjAHAAcgBlAHMAcwAuAGMAbwBtAC8AUABlAHIAcwBwAGUAYwB0AGkAdgBlAHMALQBpAG4ALQBDAHIAeQBzAHQAYQBsAGwAbwBnAHIAYQBwAGgAeQAvAEgAZQBsAGwAaQB3AGUAbABsAC8AOQA3ADgAMQA0ADkAOAA3ADMAMgAxADAAOQA.&URL=https%3a%2f%2fwww.crcpress.com%2fPerspectives-in-Crystallography%2fHelliwell%2f9781498732109>

Skills for a Scientific
Life<https://www.crcpress.com/Skills-for-a-Scientific-Life/Helliwell/p/book/9781498768757>
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