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Re: [Imgcif-l] CBF - Adding binary proprietary format header dump
- To: The Crystallographic Binary File and its imgCIF application to image data <[email protected]>
- Subject: Re: [Imgcif-l] CBF - Adding binary proprietary format header dump
- From: Brian McMahon <[email protected]>
- Date: Tue, 25 Sep 2007 09:26:00 +0100
- In-Reply-To: <[email protected]>
- References: <[email protected]>
Not my place to get into the discussion as to whether or not
Justin's proposal is desirable, but just to draw attention to
a couple of technical points about it:
> We here would, in fact, like to add our binary header to the CBF file.
> Should that just go into an additional binary section, with MIME header
> and all of that? If so, is there any recommendation as to how we can
> refer to it in the CIF headers so that I can distinguish between the
> binary image data and our binary header data? My inclination is to add
> the ".header_convention" column to my "_array_data" loop and fill it in
Is _array_data.header_convention an agreed term in the current draft
dictionary? If not, one should either request (via the imgcif-l list)
that it be added, following due community discussion, or register a
namespace prefix for your local use at
http://www.iucr.org/cgi-bin/cifreserve.pl?add
If you registered "rayonix", say, you would then be at liberty to insert
_array_data.rayonix_header_convention
> with "RAY_1.0" or something like that for the our binary header and with
> an empty value "" for the image data.
Since CIF is free-format, you can't have an unquoted blank as a null field.
Instead use a single period character:
loop_
_array_data.array_id
_array_data.binary_id
_array_data.header_convention
_array_data.data
ARRAY1 1 RAY_1.0
;
--CIF-BINARY-FORMAT-SECTION--
<<MIME header for Rayonix binary header dump>>
<<Rayonix binary header dump>>
--CIF-BINARY-FORMAT-SECTION----
;
ARRAY2 2 . #<<<<<<< Note the placeholder period
;
--CIF-BINARY-FORMAT-SECTION--
<<MIME header for image binary data>>
<<Image binary data>>
--CIF-BINARY-FORMAT-SECTION----
;
Cheers
Brian
_________________________________________________________________________
Brian McMahon tel: +44 1244 342878
Research and Development Officer fax: +44 1244 314888
International Union of Crystallography e-mail: [email protected]
5 Abbey Square, Chester CH1 2HU, England
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- [Imgcif-l] CBF - Adding binary proprietary format header dump (Justin Anderson)
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