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RE: [SA_scat] RNA SAXS programs: calculate Rg, P(r)

  • To: "Discussion list for the Small-Angle Scattering community" <sa_scat@iucr.org>
  • Subject: RE: [SA_scat] RNA SAXS programs: calculate Rg, P(r)
  • From: "Thiyagarajan, Pappannan" <thiyaga@anl.gov>
  • Date: Mon, 21 Jun 2004 17:23:25 -0500



CRYSOL calculates the P(R) function using the atomic coordinates and FTs to produce I(Q) data. It also provides Rg from the P(R) data. You can go to the website http://www.iucr.org/iucr-top/comm/csas/ and look for useful links for software.


P. Thiyagarajan, Ph.D.
Senior Physicist, IPNS- 360, Room C-237
Argonne National Laboratory
9700 S. Cass Avenue
Argonne, Il 60439
1-630-252-4163 (FAX)

For information on IPNS please see www.pns.anl.gov


From: sa_scat-bounces@iucr.org [mailto:sa_scat-bounces@iucr.org] On Behalf Of Tobin Sosnick
Sent: Monday, June 21, 2004 2:39 PM
To: sa_scat@iucr.org
Subject: [SA_scat] RNA SAXS programs: calculate Rg, P(r)



Any one know of programs to calculate Rg and P(r) curves from a PDB-style file of an RNA structure?

Thank you.

Tobin R. Sosnick, Associate Professor
Dept. of Biochemistry & Molecular Biology (773) 834-0657 (office)
Institute for Biophysical Dynamics (773) 702-0439 (fax)
University of Chicago, CLSC Room 439
920 E. 58th Street, Chicago, IL 60637
trsosnic@midway.uchicago.edu  http://sosnick.uchicago.edu/
"Life is Signal-to-Noise"

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