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Re: [SA_scat] RNA SAXS programs: calculate Rg, P(r)

Dear Cristiano Oliveira:

Thank you for the information.  Many programs can analyze proteins, but only a few can deal with RNAs (amino acids versus nucleotides).

Fortunately, I found one which can do what I needed.

 
Sincerely,
Tobin Sosnick

At 01:46 PM 7/2/2004 -0300, you wrote:

Hello Tobin,

   The program hydropro from Dr. de La torre from University of Murcia /
Spain,

http://leonardo.fcu.um.es/macromol/programs/hydropro/hydropro.htm

calculates hydrodinamic parameters, Rg and P(r) direcly from PDB file.

        Best Regards,
                        Cristiano Oliveira

*********************************************************
Cristiano Oliveira
phD student
Laboratorio de Cristalografia Aplicada e Raios-X
IFGW - Unicamp / Campinas - Brazil
55-19-37885498
*********************************************************


On Mon, 21 Jun 2004, Tobin Sosnick wrote:

> Hello:
>
> Any one know of programs to calculate Rg and P(r) curves from a PDB-style
> file of an RNA structure?
>
> Thank you.
>
> **************************************************************************
> Tobin R. Sosnick, Associate Professor
> Dept. of Biochemistry & Molecular Biology (773) 834-0657 (office)
> Institute for Biophysical Dynamics (773) 702-0439 (fax)
> University of Chicago, CLSC Room 439
> 920 E. 58th Street, Chicago, IL 60637
> trsosnic@midway.uchicago.edu  http://sosnick.uchicago.edu/
> "Life is Signal-to-Noise"
> *************************************************************************
>

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******************************************************
Tobin R. Sosnick, Associate Professor
Dept. of Biochemistry & Molecular Biology
Institute for Biophysical Dynamics
University of Chicago (773) 834-0657 (office)
CLSC Room 439 (773) 702-0439 (fax)
920 E. 58th Street
Chicago, IL 60637
trsosnic@midway.uchicago.edu 
http://sosnick.uchicago.edu/
*******************************************************
 

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