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Regards,
Herbert
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Re: [dddwg] DDDWG: Standards for metadata
- To: "Terwilliger, Thomas Charles" <terwilliger@lanl.gov>
- Subject: Re: [dddwg] DDDWG: Standards for metadata
- From: "Herbert J. Bernstein" <yayahjb@gmail.com>
- Date: Tue, 16 Feb 2016 15:13:15 -0500
- Cc: =?UTF-8?Q?Andreas_F=C3=B6rster?= <docandreas@gmail.com>, "john.westbrook@rcsb.org" <john.westbrook@rcsb.org>, IUCr Working Group on Diffraction data Deposition <dddwg@iucr.org>
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Dear Tom,
My pleasure. The document you have created seems to be a very useful start. If I may, I would propose to discuss the approaches used in imgCIF and in NeXus NXmx to handling that information, inasmuch as we are likely to have many images using those formats, and COMCIFS and NIAC are interested in achieving interoperability between them. Would that be helpful?On Tue, Feb 16, 2016 at 3:05 PM, Terwilliger, Thomas Charles <terwilliger@lanl.gov> wrote:
Hi Herbert and John,If you would both like to be part of this ad-hoc metadata working group that would be great!All the best,Tom T
On Feb 16, 2016, at 11:29 AM, Herbert J. Bernstein wrote:
HerbertRegards,Dear Colleagues,I would be very happy to participate if that would be helpful. Even if the additional PDB metadata is not needed or immediately available during collection, it would be a good idea to keep the PDB metadata standards well in mind during this discussion, so that the collection metadata can be smoothly integrated with the PDB metadata further downstream for datasets that end up being used for a deposition. Therefore I would suggest including John Westbrook.
_______________________________________________
On Tue, Feb 16, 2016 at 1:21 PM, john.westbrook@rcsb.org <john.westbrook@rcsb.org> wrote:
Hi Tom,
I am not sure if Herbert Bernstein is looped in to these discussions, but as the maintainer of the
imgCIF dictionary and Nexus mappings, Herbert would be a very valuable contributor this this effort.
If the discussion is to include details of the experimental sample and molecular system I would
also be happy to described the meta data items which exist within PDBx/mmCIF.
Regards,
John
On 2/16/16 12:40 PM, Terwilliger, Thomas Charles wrote:
_______________________________________________Hi DDDWG members!
As Wladek has mentioned, we have set up a small working group to develop standards for metadata for diffraction images. The members of the working group are Andreas Forster, Wladek Minor, and Loes Kroon-Batenburg.
Wladek has drafted a starting point for these standards and I have attached an edited version. Your comments are welcome and I have included emails for the working group members so that they can see your comments!
All the best,
Tom T
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--
John Westbrook, Ph.D.
RCSB, Protein Data Bank
Rutgers, The State University of New Jersey
Department of Chemistry and Chemical Biology
174 Frelinghuysen Rd
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e-mail: john.westbrook@rcsb.org
Ph: (848) 445-4290 Fax: (732) 445-4320
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- References:
- [dddwg] ESRF data policy article (Andy Gotz)
- Re: [dddwg] ESRF data policy article (John Helliwell)
- Re: [dddwg] ESRF data policy article (Andy Gotz)
- Re: [dddwg] ESRF data policy article (Wladek Minor)
- Re: [dddwg] ESRF data policy article (Gordon LEONARD)
- Re: [dddwg] ESRF data policy article (Wladek Minor)
- Re: [dddwg] ESRF data policy article (john.westbrook@rcsb.org)
- [dddwg] DDDWG: Standards for metadata (Terwilliger, Thomas Charles)
- Re: [dddwg] DDDWG: Standards for metadata (john.westbrook@rcsb.org)
- Re: [dddwg] DDDWG: Standards for metadata (Herbert J. Bernstein)
- Re: [dddwg] DDDWG: Standards for metadata (Terwilliger, Thomas Charles)
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