Modeller

Entered: Wed Nov 24 2010

Operating systems: AIX; Irix; Linux; OSF1; Solaris

Type: Binary

Languages: Fortran

Distribution: Free for academic use

Application fields: Biology

Bibliography:

Description: Homology or comparative modeling of protein three-dimensional structures. The user provides an alignment of a sequence to be modeled and MODELLER automatically calculates a model containing all non-hydrogen atoms. Implements comparative protein structure modeling by satisfaction of spatial restraints and can perform many additional tasks, including de novo modeling of oligopeptides, optimization of various models of protein structure with respect to a flexibly defined objective function, multiple alignment of protein sequences and/or structures, clustering, searching of sequence databases, comparison of protein structures, etc.

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Last updated: 09 May 2011